Umbrella Study of MASTER/H021 data (not to be released, pool)

Type: Cancer Genomics
Archiver: European Genome-Phenome Archive (EGA)

60 Datasets

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001006184	linking MASTER H021-Cohort to EGAS0001004157	HiSeq X Ten Illumina HiSeq 2500 Illumina HiSeq 4000	10
EGAD00001006613	linking 82 samples/82 runs of WES from EGAS00001004338 Umbrella study to EGAS0001004786 study	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	-
EGAD00001006614	linking 58 samples/58 runs of WGS from EGAS00001004338 Umbrella study to EGAS0001004786 study	HiSeq X Ten	-
EGAD00001006615	linking 55 samples/74 RNA-Seq runs - out of EGAS00001004338 Umbrella study to EGAS0001004786	HiSeq X Ten Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	-
EGAD00001008846	Rare cancer sequencing data of 45 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2500 Illumina HiSeq 4000	26
EGAD00001008847	Rare cancer sequencing data of 95 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2500 Illumina HiSeq 4000	64
EGAD00001008857	Rare cancer sequencing data of 58 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	40
EGAD00001008858	Rare cancer sequencing data of 49 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	35
EGAD00001008859	Rare cancer sequencing data of 243 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	164
EGAD00001008862	Rare cancer sequencing data of 145 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2500 Illumina HiSeq 4000	104
EGAD00001008863	Rare cancer sequencing data of 119 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 2500 Illumina HiSeq 4000	76
EGAD00001008865	Rare cancer sequencing data of 87 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2500 Illumina HiSeq 4000	87
EGAD00001008866	Rare cancer sequencing data of 48 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	48
EGAD00001008867	Rare cancer sequencing data of 12 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	12
EGAD00001008868	Rare cancer sequencing data of 94 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	91
EGAD00001008869	Rare cancer sequencing data of 46 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	46
EGAD00001008870	Rare cancer sequencing data of 62 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	59
EGAD00001008871	Rare cancer sequencing data of 119 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	117
EGAD00001008872	Rare cancer sequencing data of 54 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	52
EGAD00001008874	Rare cancer sequencing data of 18 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	18
EGAD00001008875	Rare cancer sequencing data of 64 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2500 Illumina HiSeq 4000	61
EGAD00001008876	Rare cancer sequencing data of 18 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	12
EGAD00001008877	Rare cancer sequencing data of 55 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	55
EGAD00001008878	Rare cancer sequencing data of 38 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	31
EGAD00001008879	Rare cancer sequencing data of 56 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	54
EGAD00001008881	Rare cancer sequencing data of 49 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	44
EGAD00001008882	Rare cancer sequencing data of 91 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	78
EGAD00001008883	Rare cancer sequencing data of 162 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2500 Illumina HiSeq 4000	149
EGAD00001008884	Rare cancer sequencing data of 83 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	71
EGAD00001008885	Rare cancer sequencing data of 96 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	89
EGAD00001008886	Rare cancer sequencing data of 29 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	28
EGAD00001008887	Rare cancer sequencing data of 66 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	58
EGAD00001008888	Rare cancer sequencing data of 48 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	41
EGAD00001008889	Rare cancer sequencing data of 22 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	17
EGAD00001008890	Rare cancer sequencing data of 76 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	72
EGAD00001008891	Rare cancer sequencing data of 164 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	159
EGAD00001008892	Rare cancer sequencing data of 42 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	42
EGAD00001008893	Rare cancer sequencing data of 112 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	100
EGAD00001008894	Rare cancer sequencing data of 34 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	28
EGAD00001008895	Rare cancer sequencing data of 49 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	43
EGAD00001008896	Rare cancer sequencing data of 137 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	138
EGAD00001008897	Rare cancer sequencing data of 246 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	250
EGAD00001008900	Rare cancer sequencing data of 142 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	134
EGAD00001008901	Rare cancer sequencing data of 28 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 4000	24
EGAD00001008902	Rare cancer sequencing data of 85 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	77
EGAD00001008903	Rare cancer sequencing data of 36 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	34
EGAD00001008904	Rare cancer sequencing data of 112 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	106
EGAD00001009272	WES/WGS sequencing data of 234 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	233
EGAD00001009273	WES/WGS sequencing data of 86 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	86
EGAD00001009274	WES/WGS sequencing data of 337 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten Illumina HiSeq 4000	319
EGAD00001009275	WES/WGS sequencing data of 56 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	56
EGAD00001009276	WES/WGS sequencing data of 75 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	74
EGAD00001009277	WES/WGS sequencing data of 44 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	40
EGAD00001009278	WES/WGS sequencing data of 242 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	Illumina HiSeq 2500 Illumina HiSeq 4000	242
EGAD00001009279	WES/WGS sequencing data of 239 chromothriptic tumor and control runs, which were uploaded to umbrella studies. The sequencing was always paired	HiSeq X Ten	218
EGAD00001009671	Sequencing data of 39 tumor and control runs (different tumors and blood controls), which were uploaded to EGAS00001004813 and reused in this ImmuNEO publication. The sequencing was always paired.	HiSeq X Ten Illumina HiSeq 4000	-
EGAD00001010046	WES/WGS sequencing data of 37 germline runs, which were uploaded to umbrella studies. The sequencing was always paired. The WGS sequencing was on HiSeq X Ten using the Illumina TruSeq DNA Nano Kit. The WES Sequencing was on HiSeq4000 with Agilent Sureselect V5+UTR.	HiSeq X Ten Illumina HiSeq 2500 Illumina HiSeq 4000	1
EGAD00001010257	Sequencing data of 77 sarcoma tumor and control runs, which were uploaded to EGAS00001004813. The sequencing was always paired.	HiSeq X Ten	1
EGAD00001010258	Sequencing data of 144 sarcoma tumor and control runs, which were uploaded to EGAS00001004813. The sequencing was always paired.	Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	1
EGAD00001010276	Sequencing data of 410 sarcoma tumor runs, which were uploaded to EGAS00001004813. The sequencing was always paired.	HiSeq X Ten Illumina HiSeq 2000 Illumina HiSeq 2500 Illumina HiSeq 4000	1