Gencord Data Access Committee

emmanouil.dermitzakis@unige.ch

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Dataset ID	Description	Technology	Samples
EGAD00000000027	eQTL data for European newborns	Ilumina HumanHap550-2v3_B-Beadstudio	176
EGAD00001000425	GENCORD2 RNA-seq BAM files using BWA	Illumina Genome Analyzer II Illumina HiSeq 2000	568
EGAD00001000428	204 individuals were genotyped with the Illumina 2.5M Omni chip. Filtered genotypes were imputed into the 1000 genomes project European panel SNPs. Beagle R2 is indicated in VCF files for further filtering. See Materials and Methods in publication for details.		204
EGAD00001004790	This dataset contains the imputed genotypes for the gencord samples. Genotyping was done using Illumina OMNI2.5M. Imputation was done using SHAPEIT2/IMPUTE2 with 1000 genomes project phase 3 reference panel.		251
EGAD00001004871	ChIP-seq data for Lymphoblastoid Cell Lines (LCL) and Fibroblasts (FIB) from the Gencord Cohort: - 160 LCLs assayed for H3K27ac, H3K4me1 and H3K4me3, - 78 FIB assayed for H3K4me3 and 79 FIB assayed for H3K27ac and H3K4me1 This dataset was generated as part of the following study: Delaneau et al (2019). Chromatin 3D interactions mediate genetic effects on gene expression.	Illumina HiSeq 2000	239
EGAD00001004872	RNA-seq data for 168 Lymphoblastoid Cell Lines (LCL) and 78 Fibroblasts (FIB) from the Gencord Cohort. This dataset was generated as part of the following study: Delaneau et al (2019). Chromatin 3D interactions mediate genetic effects on gene expression.	Illumina HiSeq 2000	246
EGAD00010000460	GENCORD2 DNA methylation		294