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Chromatin 3D interactions mediate genetic effects on gene expression (RNA-seq)

RNA-seq data for 168 Lymphoblastoid Cell Lines (LCL) and 78 Fibroblasts (FIB) from the Gencord Cohort. This dataset was generated as part of the following study: Delaneau et al (2019). Chromatin 3D interactions mediate genetic effects on gene expression.

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Policy Statement GENCORD2

To whom it may concern,This document refers to the data set, EGAS00001000446, which has been submitted to the European Genome Archive (EGA) for the controlled access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the Gencord Data Access Committee, composed by: Stylianos Antonarakis, University of Geneva (co-chair) Emmanouil Dermitzakis, University of Geneva (co-chair) Serge Ferrari, University of Geneva Alexandre Reymond, University of Lausanne All requests for data access should be sent to both: Stylianos Antonarakis (stylianos. antonarakis@unige.ch) and Emmanouil Dermitzakis (emmanouil.dermitzakis@unige.ch). There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by the Gencord Data Access Committee.The submission of our dataset is in accordance with the local ethics committee approval and the laws and regulations of canton of Geneva and Switzerland, and in accordance with the informed consent and the local ethics approval of the University Hospitals of the University of Geneva. Please be advised that Olivier Delaneau (olivier.delaneau@unil.ch) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Sincerely, Emmanouil Dermitzakis Stylianos Antonarakis

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002405009 bam 1.8 GB
EGAF00002405010 bam 2.1 GB
EGAF00002405011 bam 2.1 GB
EGAF00002405012 bam 1.9 GB
EGAF00002405013 bam 2.9 GB
EGAF00002405014 bam 1.6 GB
EGAF00002405015 bam 1.7 GB
EGAF00002405016 bam 1.7 GB
EGAF00002405017 bam 1.5 GB
EGAF00002405018 bam 1.4 GB
EGAF00002405019 bam 1.6 GB
EGAF00002405020 bam 1.6 GB
EGAF00002405021 bam 1.5 GB
EGAF00002405022 bam 1.6 GB
EGAF00002405023 bam 1.6 GB
EGAF00002405024 bam 1.5 GB
EGAF00002405025 bam 1.6 GB
EGAF00002405026 bam 1.3 GB
EGAF00002405027 bam 1.5 GB
EGAF00002405028 bam 1.3 GB
EGAF00002405029 bam 1.7 GB
EGAF00002405030 bam 1.6 GB
EGAF00002405031 bam 1.3 GB
EGAF00002405032 bam 1.3 GB
EGAF00002405033 bam 1.5 GB
EGAF00002405034 bam 1.6 GB
EGAF00002405035 bam 1.6 GB
EGAF00002405036 bam 1.5 GB
EGAF00002405037 bam 1.4 GB
EGAF00002405038 bam 1.4 GB
EGAF00002405039 bam 2.0 GB
EGAF00002405040 bam 1.9 GB
EGAF00002405041 bam 2.0 GB
EGAF00002405042 bam 2.3 GB
EGAF00002405043 bam 1.6 GB
EGAF00002405044 bam 2.2 GB
EGAF00002405045 bam 2.3 GB
EGAF00002405046 bam 1.3 GB
EGAF00002405047 bam 1.4 GB
EGAF00002405048 bam 1.7 GB
EGAF00002405049 bam 1.5 GB
EGAF00002405050 bam 1.4 GB
EGAF00002405051 bam 1.1 GB
EGAF00002405052 bam 1.5 GB
EGAF00002405053 bam 1.5 GB
EGAF00002405054 bam 1.4 GB
EGAF00002405055 bam 1.5 GB
EGAF00002405056 bam 1.5 GB
EGAF00002405057 bam 1.5 GB
EGAF00002405058 bam 1.6 GB
EGAF00002405059 bam 2.2 GB
EGAF00002405060 bam 1.4 GB
EGAF00002405061 bam 1.3 GB
EGAF00002405062 bam 1.5 GB
EGAF00002405063 bam 1.6 GB
EGAF00002405064 bam 1.4 GB
EGAF00002405065 bam 1.6 GB
EGAF00002405066 bam 1.6 GB
EGAF00002405067 bam 1.9 GB
EGAF00002405068 bam 1.5 GB
EGAF00002405069 bam 1.7 GB
EGAF00002405070 bam 1.7 GB
EGAF00002405071 bam 1.6 GB
EGAF00002405072 bam 1.5 GB
EGAF00002405073 bam 1.5 GB
EGAF00002405074 bam 1.7 GB
EGAF00002405075 bam 1.3 GB
EGAF00002405076 bam 1.7 GB
EGAF00002405077 bam 1.9 GB
EGAF00002405078 bam 1.6 GB
EGAF00002405079 bam 1.6 GB
EGAF00002405080 bam 1.4 GB
EGAF00002405081 bam 962.8 MB
EGAF00002405082 bam 1.3 GB
EGAF00002405083 bam 1.4 GB
EGAF00002405084 bam 1.6 GB
EGAF00002405085 bam 1.7 GB
EGAF00002405086 bam 1.6 GB
EGAF00002405087 bam 1.4 GB
EGAF00002405088 bam 1.4 GB
EGAF00002405089 bam 1.7 GB
EGAF00002405090 bam 1.5 GB
EGAF00002405091 bam 1.7 GB
EGAF00002405092 bam 2.0 GB
EGAF00002405093 bam 1.5 GB
EGAF00002405094 bam 1.5 GB
EGAF00002405095 bam 1.4 GB
EGAF00002405096 bam 1.5 GB
EGAF00002405097 bam 1.6 GB
EGAF00002405098 bam 1.5 GB
EGAF00002405099 bam 1.4 GB
EGAF00002405100 bam 1.7 GB
EGAF00002405101 bam 1.6 GB
EGAF00002405102 bam 1.5 GB
EGAF00002405103 bam 1.5 GB
EGAF00002405104 bam 1.5 GB
EGAF00002405105 bam 1.4 GB
EGAF00002405106 bam 1.9 GB
EGAF00002405107 bam 1.5 GB
EGAF00002405108 bam 1.5 GB
EGAF00002405109 bam 1.6 GB
EGAF00002405110 bam 1.5 GB
EGAF00002405111 bam 1.4 GB
EGAF00002405112 bam 1.4 GB
EGAF00002405113 bam 2.1 GB
EGAF00002405114 bam 2.1 GB
EGAF00002405115 bam 2.4 GB
EGAF00002405116 bam 1.4 GB
EGAF00002405117 bam 1.9 GB
EGAF00002405118 bam 2.2 GB
EGAF00002405119 bam 2.1 GB
EGAF00002405120 bam 1.7 GB
EGAF00002405121 bam 1.4 GB
EGAF00002405122 bam 2.2 GB
EGAF00002405123 bam 1.5 GB
EGAF00002405124 bam 2.0 GB
EGAF00002405125 bam 1.3 GB
EGAF00002405126 bam 1.3 GB
EGAF00002405127 bam 1.2 GB
EGAF00002405128 bam 1.2 GB
EGAF00002405129 bam 1.3 GB
EGAF00002405130 bam 1.2 GB
EGAF00002405131 bam 1.6 GB
EGAF00002405132 bam 1.6 GB
EGAF00002405133 bam 1.7 GB
EGAF00002405134 bam 1.9 GB
EGAF00002405135 bam 1.3 GB
EGAF00002405136 bam 1.6 GB
EGAF00002405137 bam 1.6 GB
EGAF00002405138 bam 1.2 GB
EGAF00002405139 bam 1.6 GB
EGAF00002405140 bam 1.4 GB
EGAF00002405141 bam 1.3 GB
EGAF00002405142 bam 1.4 GB
EGAF00002405143 bam 5.9 GB
EGAF00002405144 bam 1.5 GB
EGAF00002405145 bam 1.3 GB
EGAF00002405146 bam 1.2 GB
EGAF00002405147 bam 1.3 GB
EGAF00002405148 bam 1.5 GB
EGAF00002405149 bam 1.5 GB
EGAF00002405150 bam 1.3 GB
EGAF00002405151 bam 1.5 GB
EGAF00002405152 bam 1.7 GB
EGAF00002405153 bam 1.2 GB
EGAF00002405154 bam 1.3 GB
EGAF00002405155 bam 1.5 GB
EGAF00002405156 bam 1.4 GB
EGAF00002405157 bam 1.6 GB
EGAF00002405158 bam 1.4 GB
EGAF00002405159 bam 1.5 GB
EGAF00002405160 bam 1.5 GB
EGAF00002405161 bam 1.6 GB
EGAF00002405162 bam 1.6 GB
EGAF00002405163 bam 1.6 GB
EGAF00002405164 bam 1.6 GB
EGAF00002405165 bam 1.4 GB
EGAF00002405166 bam 1.4 GB
EGAF00002405167 bam 1.4 GB
EGAF00002405168 bam 1.5 GB
EGAF00002405169 bam 1.5 GB
EGAF00002405170 bam 2.0 GB
EGAF00002405171 bam 2.0 GB
EGAF00002405172 bam 2.0 GB
EGAF00002405173 bam 2.0 GB
EGAF00002405174 bam 1.9 GB
EGAF00002405175 bam 2.1 GB
EGAF00002405176 bam 2.1 GB
EGAF00002405177 bam 2.0 GB
EGAF00002405178 bam 2.1 GB
EGAF00002405179 bam 2.0 GB
EGAF00002405180 bam 2.4 GB
EGAF00002405181 bam 2.2 GB
EGAF00002405182 bam 2.4 GB
EGAF00002405183 bam 1.9 GB
EGAF00002405184 bam 2.1 GB
EGAF00002405185 bam 2.0 GB
EGAF00002405186 bam 2.4 GB
EGAF00002405187 bam 1.3 GB
EGAF00002405188 bam 1.9 GB
EGAF00002405189 bam 2.3 GB
EGAF00002405190 bam 2.1 GB
EGAF00002405191 bam 2.1 GB
EGAF00002405192 bam 2.4 GB
EGAF00002405193 bam 1.4 GB
EGAF00002405194 bam 1.5 GB
EGAF00002405195 bam 2.1 GB
EGAF00002405196 bam 1.2 GB
EGAF00002405197 bam 1.4 GB
EGAF00002405198 bam 1.1 GB
EGAF00002405199 bam 1.2 GB
EGAF00002405200 bam 2.0 GB
EGAF00002405201 bam 1.8 GB
EGAF00002405202 bam 899.2 MB
EGAF00002405203 bam 1.7 GB
EGAF00002405204 bam 1.7 GB
EGAF00002405205 bam 1.4 GB
EGAF00002405206 bam 1.6 GB
EGAF00002405207 bam 1.4 GB
EGAF00002405208 bam 1.5 GB
EGAF00002405209 bam 1.4 GB
EGAF00002405210 bam 1.4 GB
EGAF00002405211 bam 911.7 MB
EGAF00002405212 bam 1.1 GB
EGAF00002405213 bam 1.8 GB
EGAF00002405214 bam 1.4 GB
EGAF00002405215 bam 1.5 GB
EGAF00002405216 bam 1.9 GB
EGAF00002405217 bam 1.5 GB
EGAF00002405218 bam 1.6 GB
EGAF00002405219 bam 1.7 GB
EGAF00002405220 bam 1.2 GB
EGAF00002405221 bam 1.8 GB
EGAF00002405222 bam 1.4 GB
EGAF00002405223 bam 850.0 MB
EGAF00002405224 bam 1.8 GB
EGAF00002405225 bam 1.5 GB
EGAF00002405226 bam 1.8 GB
EGAF00002405227 bam 1.7 GB
EGAF00002405228 bam 1.5 GB
EGAF00002405229 bam 1.1 GB
EGAF00002405230 bam 1.6 GB
EGAF00002405231 bam 1.5 GB
EGAF00002405232 bam 1.6 GB
EGAF00002405233 bam 1.2 GB
EGAF00002405234 bam 1.5 GB
EGAF00002405235 bam 1.5 GB
EGAF00002405236 bam 1.7 GB
EGAF00002405237 bam 1.6 GB
EGAF00002405238 bam 1.8 GB
EGAF00002405239 bam 1.5 GB
EGAF00002405240 bam 1.5 GB
EGAF00002405241 bam 1.7 GB
EGAF00002405242 bam 1.5 GB
EGAF00002405243 bam 1.5 GB
EGAF00002405244 bam 839.9 MB
EGAF00002405245 bam 1.4 GB
EGAF00002405246 bam 1.8 GB
EGAF00002405247 bam 1.5 GB
EGAF00002405248 bam 1.4 GB
EGAF00002405249 bam 1.6 GB
EGAF00002405250 bam 1.5 GB
EGAF00002405251 bam 1.6 GB
EGAF00002405252 bam 1.7 GB
EGAF00002405253 bam 801.2 MB
EGAF00002405254 bam 1.8 GB
246 Files (398.3 GB)