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Chromatin 3D interactions mediate genetic effects on gene expression (ChIP-seq)

ChIP-seq data for Lymphoblastoid Cell Lines (LCL) and Fibroblasts (FIB) from the Gencord Cohort: - 160 LCLs assayed for H3K27ac, H3K4me1 and H3K4me3, - 78 FIB assayed for H3K4me3 and 79 FIB assayed for H3K27ac and H3K4me1 This dataset was generated as part of the following study: Delaneau et al (2019). Chromatin 3D interactions mediate genetic effects on gene expression.

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Policy Statement GENCORD2

To whom it may concern,This document refers to the data set, EGAS00001000446, which has been submitted to the European Genome Archive (EGA) for the controlled access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the Gencord Data Access Committee, composed by: Stylianos Antonarakis, University of Geneva (co-chair) Emmanouil Dermitzakis, University of Geneva (co-chair) Serge Ferrari, University of Geneva Alexandre Reymond, University of Lausanne All requests for data access should be sent to both: Stylianos Antonarakis (stylianos. antonarakis@unige.ch) and Emmanouil Dermitzakis (emmanouil.dermitzakis@unige.ch). There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by the Gencord Data Access Committee.The submission of our dataset is in accordance with the local ethics committee approval and the laws and regulations of canton of Geneva and Switzerland, and in accordance with the informed consent and the local ethics approval of the University Hospitals of the University of Geneva. Please be advised that Olivier Delaneau (olivier.delaneau@unil.ch) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Sincerely, Emmanouil Dermitzakis Stylianos Antonarakis

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003485 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002437554 bam 1.1 GB
EGAF00002437555 bam 677.5 MB
EGAF00002437556 bam 1.3 GB
EGAF00002437557 bam 504.3 MB
EGAF00002437558 bam 821.6 MB
EGAF00002437559 bam 307.9 MB
EGAF00002437560 bam 998.1 MB
EGAF00002437561 bam 728.1 MB
EGAF00002437562 bam 1.3 GB
EGAF00002437563 bam 807.2 MB
EGAF00002437564 bam 1.6 GB
EGAF00002437565 bam 1.1 GB
EGAF00002437566 bam 1.6 GB
EGAF00002437567 bam 1.8 GB
EGAF00002437568 bam 1.6 GB
EGAF00002437569 bam 1.2 GB
EGAF00002437570 bam 1.8 GB
EGAF00002437571 bam 1.3 GB
EGAF00002437572 bam 1.3 GB
EGAF00002437573 bam 1.4 GB
EGAF00002437574 bam 1.4 GB
EGAF00002437575 bam 1.3 GB
EGAF00002437576 bam 1.4 GB
EGAF00002437577 bam 797.9 MB
EGAF00002437578 bam 8.6 GB
EGAF00002437579 bam 2.4 GB
EGAF00002437580 bam 1.1 GB
EGAF00002437581 bam 452.5 MB
EGAF00002437582 bam 841.9 MB
EGAF00002437583 bam 504.3 MB
EGAF00002437584 bam 799.3 MB
EGAF00002437585 bam 731.7 MB
EGAF00002437586 bam 820.5 MB
EGAF00002437587 bam 856.4 MB
EGAF00002437588 bam 1.3 GB
EGAF00002437589 bam 1.2 GB
EGAF00002437590 bam 985.4 MB
EGAF00002437591 bam 1.1 GB
EGAF00002437592 bam 787.1 MB
EGAF00002437593 bam 4.0 GB
EGAF00002437594 bam 1.1 GB
EGAF00002437595 bam 936.8 MB
EGAF00002437596 bam 956.2 MB
EGAF00002437597 bam 1.2 GB
EGAF00002437598 bam 1.4 GB
EGAF00002437599 bam 783.6 MB
EGAF00002437600 bam 899.4 MB
EGAF00002437601 bam 1.2 GB
EGAF00002437602 bam 1.3 GB
EGAF00002437603 bam 352.2 MB
EGAF00002437604 bam 915.4 MB
EGAF00002437605 bam 1.2 GB
EGAF00002437606 bam 1.7 GB
EGAF00002437607 bam 1.8 GB
EGAF00002437608 bam 1.4 GB
EGAF00002437609 bam 1.5 GB
EGAF00002437610 bam 1.6 GB
EGAF00002437611 bam 3.0 GB
EGAF00002437612 bam 1.9 GB
EGAF00002437613 bam 591.1 MB
EGAF00002437614 bam 1.2 GB
EGAF00002437615 bam 1.1 GB
EGAF00002437616 bam 1.4 GB
EGAF00002437617 bam 1.3 GB
EGAF00002437618 bam 1.8 GB
EGAF00002437619 bam 1.3 GB
EGAF00002437620 bam 1.4 GB
EGAF00002437621 bam 647.4 MB
EGAF00002437622 bam 1.0 GB
EGAF00002437623 bam 1.5 GB
EGAF00002437624 bam 1.4 GB
EGAF00002437625 bam 726.0 MB
EGAF00002437626 bam 1.5 GB
EGAF00002437627 bam 628.6 MB
EGAF00002437628 bam 614.8 MB
EGAF00002437629 bam 1.0 GB
EGAF00002437630 bam 1.3 GB
EGAF00002437631 bam 1.6 GB
EGAF00002437632 bam 740.7 MB
EGAF00002437633 bam 922.4 MB
EGAF00002437634 bam 1.0 GB
EGAF00002437635 bam 1.3 GB
EGAF00002437636 bam 932.5 MB
EGAF00002437637 bam 705.0 MB
EGAF00002437638 bam 699.9 MB
EGAF00002437639 bam 1.1 GB
EGAF00002437640 bam 397.5 MB
EGAF00002437641 bam 1.2 GB
EGAF00002437642 bam 1.3 GB
EGAF00002437643 bam 764.1 MB
EGAF00002437644 bam 1.1 GB
EGAF00002437645 bam 963.7 MB
EGAF00002437646 bam 1.1 GB
EGAF00002437647 bam 355.6 MB
EGAF00002437648 bam 1.3 GB
EGAF00002437649 bam 544.5 MB
EGAF00002437650 bam 863.1 MB
EGAF00002437651 bam 1.1 GB
EGAF00002437652 bam 1.1 GB
EGAF00002437653 bam 374.6 MB
EGAF00002437654 bam 1.0 GB
EGAF00002437655 bam 1.2 GB
EGAF00002437656 bam 838.0 MB
EGAF00002437657 bam 1.4 GB
EGAF00002437658 bam 697.6 MB
EGAF00002437659 bam 1.2 GB
EGAF00002437660 bam 1.6 GB
EGAF00002437661 bam 712.7 MB
EGAF00002437662 bam 1.2 GB
EGAF00002437663 bam 697.9 MB
EGAF00002437664 bam 1.3 GB
EGAF00002437665 bam 1.5 GB
EGAF00002437666 bam 1.3 GB
EGAF00002437667 bam 491.4 MB
EGAF00002437668 bam 1.6 GB
EGAF00002437669 bam 1.6 GB
EGAF00002437670 bam 664.2 MB
EGAF00002437671 bam 1.4 GB
EGAF00002437672 bam 1.2 GB
EGAF00002437673 bam 642.5 MB
EGAF00002437674 bam 1.6 GB
EGAF00002437675 bam 1.4 GB
EGAF00002437676 bam 1.3 GB
EGAF00002437677 bam 1.4 GB
EGAF00002437678 bam 1.3 GB
EGAF00002437679 bam 1.3 GB
EGAF00002437680 bam 1.4 GB
EGAF00002437681 bam 622.1 MB
EGAF00002437682 bam 1.2 GB
EGAF00002437683 bam 1.4 GB
EGAF00002437684 bam 1.0 GB
EGAF00002437685 bam 1.2 GB
EGAF00002437686 bam 1.2 GB
EGAF00002437687 bam 983.6 MB
EGAF00002437688 bam 1.4 GB
EGAF00002437689 bam 975.6 MB
EGAF00002437690 bam 887.4 MB
EGAF00002437691 bam 862.0 MB
EGAF00002437692 bam 872.6 MB
EGAF00002437693 bam 1.9 GB
EGAF00002437694 bam 886.3 MB
EGAF00002437695 bam 1.1 GB
EGAF00002437696 bam 400.5 MB
EGAF00002437697 bam 600.3 MB
EGAF00002437698 bam 971.6 MB
EGAF00002437699 bam 947.7 MB
EGAF00002437700 bam 1.2 GB
EGAF00002437701 bam 1.2 GB
EGAF00002437702 bam 723.9 MB
EGAF00002437703 bam 902.6 MB
EGAF00002437704 bam 989.4 MB
EGAF00002437705 bam 1.1 GB
EGAF00002437706 bam 735.4 MB
EGAF00002437707 bam 1.2 GB
EGAF00002437708 bam 1.2 GB
EGAF00002437709 bam 1.0 GB
EGAF00002437710 bam 1.4 GB
EGAF00002437711 bam 1.4 GB
EGAF00002437712 bam 1.4 GB
EGAF00002437713 bam 1.1 GB
EGAF00002437714 bam 1.3 GB
EGAF00002437715 bam 1.6 GB
EGAF00002437716 bam 1.5 GB
EGAF00002437717 bam 1.4 GB
EGAF00002437718 bam 367.8 MB
EGAF00002437719 bam 1.7 GB
EGAF00002437720 bam 1.1 GB
EGAF00002437721 bam 1.3 GB
EGAF00002437722 bam 943.1 MB
EGAF00002437723 bam 703.5 MB
EGAF00002437724 bam 807.4 MB
EGAF00002437725 bam 1.0 GB
EGAF00002437726 bam 1.2 GB
EGAF00002437727 bam 803.7 MB
EGAF00002437728 bam 925.7 MB
EGAF00002437729 bam 896.7 MB
EGAF00002437730 bam 959.9 MB
EGAF00002437731 bam 638.6 MB
EGAF00002437732 bam 838.1 MB
EGAF00002437733 bam 384.5 MB
EGAF00002437734 bam 1.2 GB
EGAF00002437735 bam 1.1 GB
EGAF00002437736 bam 394.1 MB
EGAF00002437737 bam 698.2 MB
EGAF00002437738 bam 726.3 MB
EGAF00002437739 bam 864.1 MB
EGAF00002437740 bam 1.2 GB
EGAF00002437741 bam 817.4 MB
EGAF00002437742 bam 733.1 MB
EGAF00002437743 bam 1.0 GB
EGAF00002437744 bam 594.3 MB
EGAF00002437745 bam 874.0 MB
EGAF00002437746 bam 756.4 MB
EGAF00002437747 bam 1.1 GB
EGAF00002437748 bam 1.2 GB
EGAF00002437749 bam 1.1 GB
EGAF00002437750 bam 877.9 MB
EGAF00002437751 bam 1.3 GB
EGAF00002437752 bam 658.6 MB
EGAF00002437753 bam 918.0 MB
EGAF00002437754 bam 1.1 GB
EGAF00002437755 bam 1.3 GB
EGAF00002437756 bam 746.7 MB
EGAF00002437757 bam 876.9 MB
EGAF00002437758 bam 933.1 MB
EGAF00002437759 bam 1.2 GB
EGAF00002437760 bam 1.2 GB
EGAF00002437761 bam 926.7 MB
EGAF00002437762 bam 699.3 MB
EGAF00002437763 bam 1.1 GB
EGAF00002437764 bam 579.8 MB
EGAF00002437765 bam 524.2 MB
EGAF00002437766 bam 974.7 MB
EGAF00002437767 bam 1.1 GB
EGAF00002437768 bam 883.9 MB
EGAF00002437769 bam 681.8 MB
EGAF00002437770 bam 655.6 MB
EGAF00002437771 bam 866.3 MB
EGAF00002437772 bam 874.6 MB
EGAF00002437773 bam 1.1 GB
EGAF00002437774 bam 1.2 GB
EGAF00002437775 bam 733.6 MB
EGAF00002437776 bam 1.1 GB
EGAF00002437777 bam 1.1 GB
EGAF00002437778 bam 1.0 GB
EGAF00002437779 bam 834.6 MB
EGAF00002437780 bam 925.4 MB
EGAF00002437781 bam 818.0 MB
EGAF00002437782 bam 1.3 GB
EGAF00002437783 bam 687.8 MB
EGAF00002437784 bam 1.2 GB
EGAF00002437785 bam 1.2 GB
EGAF00002437786 bam 969.2 MB
EGAF00002437787 bam 679.9 MB
EGAF00002437788 bam 796.0 MB
EGAF00002437789 bam 1.0 GB
EGAF00002437790 bam 1.4 GB
EGAF00002437791 bam 1.3 GB
EGAF00002437792 bam 541.4 MB
EGAF00002437793 bam 755.4 MB
EGAF00002437794 bam 855.8 MB
EGAF00002437795 bam 1.2 GB
EGAF00002437796 bam 734.1 MB
EGAF00002437797 bam 1.2 GB
EGAF00002437798 bam 879.9 MB
EGAF00002437799 bam 1.2 GB
EGAF00002437800 bam 1.3 GB
EGAF00002437801 bam 901.3 MB
EGAF00002437802 bam 931.6 MB
EGAF00002437803 bam 1.0 GB
EGAF00002437804 bam 1.1 GB
EGAF00002437805 bam 1.1 GB
EGAF00002437806 bam 996.1 MB
EGAF00002437807 bam 1.1 GB
EGAF00002437808 bam 1.3 GB
EGAF00002437809 bam 1.1 GB
EGAF00002437810 bam 1.3 GB
EGAF00002437811 bam 940.5 MB
EGAF00002437812 bam 515.1 MB
EGAF00002437813 bam 938.3 MB
EGAF00002437814 bam 1.4 GB
EGAF00002437815 bam 754.9 MB
EGAF00002437816 bam 970.0 MB
EGAF00002437817 bam 651.9 MB
EGAF00002437818 bam 1.1 GB
EGAF00002437819 bam 973.8 MB
EGAF00002437820 bam 942.7 MB
EGAF00002437821 bam 954.1 MB
EGAF00002437822 bam 480.9 MB
EGAF00002437823 bam 728.2 MB
EGAF00002437824 bam 624.5 MB
EGAF00002437825 bam 583.7 MB
EGAF00002437826 bam 1.0 GB
EGAF00002437827 bam 692.5 MB
EGAF00002437828 bam 840.3 MB
EGAF00002437829 bam 570.1 MB
EGAF00002437830 bam 1.1 GB
EGAF00002437831 bam 864.1 MB
EGAF00002437832 bam 1.1 GB
EGAF00002437833 bam 797.3 MB
EGAF00002437834 bam 1.3 GB
EGAF00002437835 bam 893.4 MB
EGAF00002437836 bam 687.0 MB
EGAF00002437837 bam 882.0 MB
EGAF00002437838 bam 618.9 MB
EGAF00002437839 bam 952.2 MB
EGAF00002437840 bam 1.3 GB
EGAF00002437841 bam 1.2 GB
EGAF00002437842 bam 1.1 GB
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EGAF00002437844 bam 915.3 MB
EGAF00002437845 bam 1.1 GB
EGAF00002437846 bam 753.2 MB
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EGAF00002437848 bam 1.5 GB
EGAF00002437849 bam 945.4 MB
EGAF00002437850 bam 649.5 MB
EGAF00002437851 bam 199.7 MB
EGAF00002437852 bam 770.9 MB
EGAF00002437853 bam 1.0 GB
EGAF00002437854 bam 1.2 GB
EGAF00002437855 bam 1.5 GB
EGAF00002437856 bam 994.2 MB
EGAF00002437857 bam 432.7 MB
EGAF00002437858 bam 1.0 GB
EGAF00002437859 bam 949.3 MB
EGAF00002437860 bam 1.2 GB
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EGAF00002437862 bam 866.9 MB
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EGAF00002437864 bam 417.3 MB
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EGAF00002437868 bam 1.0 GB
EGAF00002437869 bam 394.9 MB
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EGAF00002437871 bam 1.4 GB
EGAF00002437872 bam 965.0 MB
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EGAF00002437875 bam 1.1 GB
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EGAF00002437884 bam 1.0 GB
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EGAF00002437887 bam 917.3 MB
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EGAF00002437889 bam 1.2 GB
EGAF00002437890 bam 1.1 GB
EGAF00002437891 bam 731.3 MB
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EGAF00002437901 bam 987.8 MB
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EGAF00002437946 bam 666.2 MB
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EGAF00002438023 bam 888.2 MB
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EGAF00002438031 bam 2.9 GB
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EGAF00002438034 bam 449.2 MB
EGAF00002438035 bam 767.3 MB
EGAF00002438036 bam 1.1 GB
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EGAF00002438038 bam 1.5 GB
EGAF00002438039 bam 1.3 GB
EGAF00002438040 bam 1.7 GB
EGAF00002438041 bam 969.6 MB
EGAF00002438042 bam 999.0 MB
EGAF00002438043 bam 984.5 MB
EGAF00002438044 bam 1.7 GB
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716 Files (799.5 GB)