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Genomic and epigenomic study of Japanese renal cell carcinoma including WGS, RNA-seq, ATAC-seq, and methyl-seq

We performed whole-genomic and transcriptomic sequencing of more than 100 Japanese renal cell carcinoma (RCC) cases, including clear cell RCC, papillary RCC, chromophobe RCC, and TFE3-translocated RCC. In addition, we conducted epigenome sequencing analyses: the assay for transposase-accessible chromatin sequencing (ATAC-seq) and enzymatic methyl sequencing.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001009866 Illumina NovaSeq 6000 512
EGAD00001009867 Illumina NovaSeq 6000 128
EGAD00001009868 Illumina HiSeq 2500 144
EGAD00001010003 Illumina HiSeq 2500 574
Publications Citations
Genomic and epigenomic integrative subtypes of renal cell carcinoma in a Japanese cohort.
Nat Commun 14: 2023 8383
5
Geographic variation of mutagenic exposures in kidney cancer genomes.
Nature 629: 2024 910-918
9