Single-cell analysis of the multicellular ecosystem in viral carcinogenesis by HTLV-1

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Dataset ID	Description	Technology	Samples
EGAD00001007013	Single-cell B-cell receptor sequencing (scBCR-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.	Illumina NovaSeq 6000	48
EGAD00001007014	Single-cell T-cell receptor sequencing (scTCR-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.	Illumina NovaSeq 6000	48
EGAD00001007015	Single-cell RNA sequencing (scRNA-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.	Illumina NovaSeq 6000	48
EGAD00001007016	Whole exome sequencing (WES) data of peripheral blood mononuclear cells (PBMCs) obtained from 2 ATL patients (3 samples).	HiSeq X Ten	3
EGAD00001007017	Single-cell antibody-derived tag sequencing (scADT-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.	Illumina NovaSeq 6000	48
EGAD00001007018	Bulk RNA sequencing (RNA-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 7 ATL patients (9 samples) and 9 HTLV-1-infected asymptomatic carriers.	HiSeq X Ten	18
EGAD00001007031	Targeted capture sequencing data of peripheral blood mononuclear cells (PBMCs) obtained from 4 ATL patients (6 samples) and 10 HTLV-1-infected asymptomatic carriers.	HiSeq X Ten	15
EGAD00001009852	Whole-exome sequence (WES) data of tumor-normal pairs from 40 ENKTCL patients and RNA sequence (RNA-seq) data of tumors from 20 ENKTCL patients.	HiSeq X Ten Illumina HiSeq 2000 Illumina NovaSeq 6000 PromethION unspecified	48

Publications	Citations
Single-Cell Analysis of the Multicellular Ecosystem in Viral Carcinogenesis by HTLV-1. Koya J, Saito Y, Kameda T, Kogure Y, Yuasa M, Nagasaki J, McClure MB, Shingaki S, Tabata M, Tahira Y, Akizuki K, Kamiunten A, Sekine M, Shide K, Kubuki Y, Hidaka T, Kitanaka A, Nakano N, Utsunomiya A, Togashi Y, Ogawa S, Shimoda K, Kataoka K. Blood Cancer Discov 2: 2021 450-467	7