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Single-cell analysis of the multicellular ecosystem in viral carcinogenesis by HTLV-1

Single-cell RNA sequencing (scRNA-seq), antibody-derived tag sequencing (scADT-seq) and T/B-cell receptor (TCR/BCR) sequencing (scTCR/BCR-seq) on peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001007013 Illumina NovaSeq 6000 48
EGAD00001007014 Illumina NovaSeq 6000 48
EGAD00001007015 Illumina NovaSeq 6000 48
EGAD00001007016 HiSeq X Ten 3
EGAD00001007017 Illumina NovaSeq 6000 48
EGAD00001007018 HiSeq X Ten 18
EGAD00001007031 HiSeq X Ten 15
EGAD00001009852 HiSeq X Ten Illumina HiSeq 2000 Illumina NovaSeq 6000 PromethION unspecified 48
Publications Citations
Single-Cell Analysis of the Multicellular Ecosystem in Viral Carcinogenesis by HTLV-1.
Blood Cancer Discov 2: 2021 450-467
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