9337 results for "cancer rna-seq"

in 29.00 milliseconds.

• RNA sequencing data from visceral and abdominal subcutaneous adipose tissue from morbidly obese women with normal glucose tolerance or type 2 diabetes

  The study group consisted of 17 obese women with normal glucose tolerance and 15 obese women with T2DM. Adipose tissue specimens were taken from the epigastric region of the abdominal wall (SAT) and from the major omentum (VAT). RNA was isolated and RNA sequencing was used to analyse the transcriptome. Dharuri H et al, Diabetologia. 2014;57(11):2384-92.

  Study EGAS00001001872

• Dataset for NSCLC-RNA

  Rare cancer sequencing data of 45 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired

  Dataset EGAD00001008846

• Dataset for liposarcoma-RNA

  Rare cancer sequencing data of 40 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired

  Dataset EGAD00001008854

• Somatic L1 retrotransposition in normal colorectal epthelium

  Throughout an individual’s lifetime, genomic alterations accumulate in somatic cells. However, the mutational landscape induced by retrotransposition of long interspersed nuclear element-1 (L1), a widespread mobile element in the human genome, is poorly understood in normal cells. Here, we explored the whole-genome sequences of 406 normal colorectal clones, 12 MUTYH-associated adenomatous clones, and 19 matched colorectal cancer tissues. In addition, we analyzed promoter DNA methylation status of retrotransposition-competent L1 (in 139 clones) and read-through RNA expression profiles (in 116 clones) to investigate the epigenetic regulation of L1 activity.

  Dataset EGAD00001010183

• Melanoma and Cancer-Associated Fibroblast Short-Term Cultures Derived from Patient Metastases

  The purpose of this study was to obtain tissue specimens derived from patients with melanoma to generate research tools to advance our understanding of the genetics, pathogenesis, and therapeutics of melanoma. Briefly, tissue was obtained from metastatic lesions and used to generate clonal primary cell lines from melanoma cells and fibroblasts from the tumor microenvironment. RNA was extracted from low passage cell lines using Trizol reagent. cDNA libraries were prepared using the TruSeq mRNA sample preparation kit, v2 (Illumina) and sequenced on the HiSeq 2000 platform (Illumina). The submitted files are bam files that contain both unaligned and aligned reads (human genome, build hg19).

  Study phs001115

• Pilocytic Astrocytoma ICGC PedBrain RNA sequencing

  Pilocytic Astrocytoma ICGC PedBrain RNA sequencing

  Dataset EGAD00001000617

• Dataset of CageKid Tumor RNA samples

  Dataset of CageKid Tumor RNA samples

  Dataset EGAD00001000718

• Dataset of CageKid Normal RNA samples

  Dataset of CageKid Normal RNA samples

  Dataset EGAD00001000719

• RNA sequencing of Resistant BCC samples.

  RNA sequencing of Resistant BCC samples.

  Dataset EGAD00001000881

• HipSci - Monogenic Diabetes - RNA Sequencing - January 2016

  HipSci - Monogenic Diabetes - RNA Sequencing - January 2016

  Dataset EGAD00001001955

• HipSci - Monogenic Diabetes - RNA Sequencing - April 2015

  HipSci - Monogenic Diabetes - RNA Sequencing - April 2015

  Dataset EGAD00001001953

• Reference epigenome DB31_N_Alpha_mRNA-Seq data generated from KEP study

  A DB31_N_Alpha_mRNA-Seq paired end data for alpha cells(PSA-NCAM(-), pancreas)

  Dataset EGAD00001003485

• Reference epigenome DB31_N_Alpha_smRNA-Seq data generated from KEP study

  A DB31_N_Alpha_smRNA-Seq single end data for alpha cells(PSA-NCAM(-), pancreas)

  Dataset EGAD00001003494

• Oxford Human islet ATAC-seq dataset of 5 human islets

  ATAC-seq data for 5 non-diabetic human pancreatic islet samples

  Dataset EGAD00001003759

• Reference epigenome ADMSC01_smRNA-Seq data generated from KEP study

  A ADMSC01_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003867

• Reference epigenome ADMSC02_smRNA-Seq data generated from KEP study

  A ADMSC02_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003868

• Reference epigenome ADMSC03_smRNA-Seq data generated from KEP study

  A ADMSC03_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003869

• 4C-seq data of a primary AML with t(3;8)

  The viewpoints used in the 4C-seq data were either the EVI1 promoter or the MYC super-enhancer

  Dataset EGAD00001006818

• Reference epigenome Islet-derived-MSC01 mRNA-Seq data generated from KEP study

  Islet-derived-MSC01 mRNA-Seq paired end data

  Dataset EGAD00001007160

• Reference epigenome Islet-derived-MSC02 mRNA-Seq data generated from KEP study

  Islet-derived-MSC02 mRNA-Seq paired end data

  Dataset EGAD00001007161

• Reference epigenome Islet-derived-MSC03 mRNA-Seq data generated from KEP study

  Islet-derived-MSC03 mRNA-Seq paired end data

  Dataset EGAD00001007162

• Reference epigenome Islet-derived-MSC04 mRNA-Seq data generated from KEP study

  Islet-derived-MSC04 mRNA-Seq paired end data

  Dataset EGAD00001007163

• Reference epigenome Islet-derived-iPSC01 mRNA-Seq data generated from KEP study

  Islet-derived-iPSC01 mRNA-Seq paired end data

  Dataset EGAD00001007164

• Reference epigenome Islet-derived-iPSC02 mRNA-Seq data generated from KEP study

  Islet-derived-iPSC02 mRNA-Seq paired end data

  Dataset EGAD00001007165

• Reference epigenome Pancreas-Islet02 h3k36me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007195