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9338 results for "cancer rna-seq"

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Study type

affected sib pairs aggregate genomic data amplicon sequencing atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery mendelian meta-analysis metagenomics metastasis methods development nested case-control observational other parent-offspring trios partial factorial randomized phase iii population population genomics prospective randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence single cell rna sequencing synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal whole genome sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs flx titanium 454 gs flx+ ab 3130 genetic analyzer ab 3130xl genetic analyzer ab 3730 genetic analyzer ab 3730xl genetic analyzer ab 5500 genetic analyzer ab 5500xl genetic analyzer ab 5500xl-w genetic analysis system ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid 4hq system ab solid system ab solid system 2.0 ab solid system 3.0 affymetrics_snp_6.0- affymetrix 6.0 array affymetrix genechip scanner 3000 7g affymetrix hg_u133_+2 affymetrix snp 6.0 affymetrix snp6.0 affymetrix_snp6- agilent agilent mirna microarrays agilent sureselectxt human methyl. seq aperio aperio image - h&e stained tissue_section beadarray bgiseq-500 complete genomics cytoscan dnbseq-g400 dnbseq-g400 fast epic beadchip (illumina, san diego, ca) exiqon 7th generation mircury lna microrna microarray system genechip human mapping 250k nspi genome-wide human snp array 6.0 - thermo fisher scientific gridion gsa-md v3 h and e image helicos heliscope hiseq x five hiseq x ten illlumina ht12 v3 illumina illumina 15k illumina 2.5m illumina 450k illumina 850k illumina cytosnp 12 bead array illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina hiscan illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2000 (illumina) illumina hiseq 2000;illumina illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina hiseq4000 illumina ht 12 illumina humanexome array illumina humanmethylationepic v1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium global screening array-24 illumina infinium human global screening array gsamd-24v2-0_20024620_a1 beadchip illumina infinium humanmethylation450k illumina infinium methylationepic beadchip (850 k) illumina iseq 100 illumina methylationepic array illumina miniseq illumina miseq illumina nextseq-500 illumina novaseq 6000 illumina novaseq x illumina oncoarray illumina_humanht-12v4 illuminahuman awg-6 and ht12 illuminahuman ht12 infinium methylationepic beadchip array ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl life tech - solid medip-seq minion miseq nanostring nanostring cancer immune nanostring cancer pathway nanostring ncounter nanostring ncounter max/flex nanostring ncounterâ® pancancer io 360â„¢ nanostring panel nextseq 2000 nextseq 500 nextseq 550 novaseq 6000 oligonucleotide beads of humanht-12 v4 r2 expression beadchips (illumina) oncoscan pacbio rs pacbio rs ii paired rna-sequencing data promethion qexactive plus rnaseq sequel sequel ii single cell rna-seq smartseq2_adapted snp array unspecified

Phenotypes

CHEBI:33699 CL:0000037 CL:0000038 CL:0000041 CL:0000049 CL:0000050 CL:0000051 CL:0000057 CL:0000092 CL:0000096 CL:0000235 CL:0000236 CL:0000499 CL:0000523 CL:0000557 CL:0000560 CL:0000576 CL:0000580 CL:0000582 CL:0000624 CL:0000625 CL:0000765 CL:0000786 CL:0000787 CL:0000788 CL:0000809 CL:0000810 CL:0000811 CL:0000815 CL:0000817 CL:0000837 CL:0000840 CL:0000841 CL:0000842 CL:0000844 CL:0000863 CL:0000890 CL:0000893 CL:0000896 CL:0000904 CL:0000905 CL:0000907 CL:0000913 CL:0000939 CL:0000945 CL:0000970 CL:0000972 CL:0000990 CL:0001024 CL:0001059 CL:0001062 CL:0001066 CL:0002015 CL:0002026 CL:0002057 CL:0002092 CL:0002102 CL:0002324 CL:0002326 CL:0002420 CL:0002489 CL:0002540 CL:0002555 CL:0002618 CL:0002619 CL:0010004 CL:0011114 CL:2000006 DOID:0050756 EFO:0000094 EFO:0000095 EFO:0000174 EFO:0000182 EFO:0000183 EFO:0000196 EFO:0000198 EFO:0000209 EFO:0000220 EFO:0000222 EFO:0000228 EFO:0000239 EFO:0000248 EFO:0000280 EFO:0000285 EFO:0000292 EFO:0000305 EFO:0000308 EFO:0000309 EFO:0000310 EFO:0000311 EFO:0000312 EFO:0000313 EFO:0000314 EFO:0000315 EFO:0000316 EFO:0000317 EFO:0000318 EFO:0000319 EFO:0000320 EFO:0000321 EFO:0000322 EFO:0000323 EFO:0000324 EFO:0000325 EFO:0000326 EFO:0000327 EFO:0000328 EFO:0000329 EFO:0000330 EFO:0000331 EFO:0000332 EFO:0000333 EFO:0000334 EFO:0000335 EFO:0000336 EFO:0000337 EFO:0000338 EFO:0000339 EFO:0000340 EFO:0000341 EFO:0000342 EFO:0000343 EFO:0000344 EFO:0000345 EFO:0000346 EFO:0000347 EFO:0000348 EFO:0000349 EFO:0000350 EFO:0000351 EFO:0000352 EFO:0000353 EFO:0000354 EFO:0000355 EFO:0000356 EFO:0000357 EFO:0000358 EFO:0000359 EFO:0000360 EFO:0000361 EFO:0000362 EFO:0000363 EFO:0000364 EFO:0000365 EFO:0000366 EFO:0000367 EFO:0000368 EFO:0000369 EFO:0000370 EFO:0000371 EFO:0000372 EFO:0000373 EFO:0000374 EFO:0000402 EFO:0000403 EFO:0000437 EFO:0000478 EFO:0000502 EFO:0000503 EFO:0000519 EFO:0000540 EFO:0000571 EFO:0000574 EFO:0000609 EFO:0000616 EFO:0000621 EFO:0000637 EFO:0000641 EFO:0000681 EFO:0000691 EFO:0000693 EFO:0000702 EFO:0000708 EFO:0000730 EFO:0000756 EFO:0000760 EFO:0000761 EFO:0000762 EFO:0000848 EFO:0000869 EFO:0000887 EFO:0000934 EFO:0000973 EFO:0000980 EFO:0001071 EFO:0001075 EFO:0001376 EFO:0001378 EFO:0001461 EFO:0001639 EFO:0001663 EFO:0002001 EFO:0002002 EFO:0002324 EFO:0002394 EFO:0002422 EFO:0002424 EFO:0002429 EFO:0002517 EFO:0002532 EFO:0002539 EFO:0002618 EFO:0002787 EFO:0002793 EFO:0002884 EFO:0002916 EFO:0002918 EFO:0002933 EFO:0002937 EFO:0002939 EFO:0002966 EFO:0003032 EFO:0003060 EFO:0003094 EFO:0003137 EFO:0003811 EFO:0003825 EFO:0003897 EFO:0003942 EFO:0004422 EFO:0004708 EFO:0004905 EFO:0005023 EFO:0005235 EFO:0005406 EFO:0005537 EFO:0005543 EFO:0005699 EFO:0005701 EFO:0005704 EFO:0005705 EFO:0005706 EFO:0005707 EFO:0005708 EFO:0005709 EFO:0005710 EFO:0005711 EFO:0005712 EFO:0005740 EFO:0005803 EFO:0005842 EFO:0005844 EFO:0005922 EFO:0006460 EFO:0006461 EFO:0006492 EFO:0006545 EFO:0006852 EFO:0007143 EFO:0007336 EFO:0007365 EFO:0007483 EFO:0008498 EFO:0008524 EFO:0009052 EFO:0009119 EFO:0009120 EFO:0009121 EFO:0009375 EFO:0009443 EFO:0009744 EFO:0009907 EFO:0010105 EFO:1000028 EFO:1000042 EFO:1000043 EFO:1000069 EFO:1000075 EFO:1000101 EFO:1000102 EFO:1000138 EFO:1000139 EFO:1000144 EFO:1000149 EFO:1000231 EFO:1000238 EFO:1000292 EFO:1000307 EFO:1000318 EFO:1000388 EFO:1000414 EFO:1000416 EFO:1000429 EFO:1000575 EFO:1000646 EFO:1000796 EFO:1000950 EFO:1001038 EFO:1001100 EFO:1001480 EFO:1001514 EFO:1001515 EFO:1001946 EFO:1001950 EFO:1001951 EFO:1001956 EFO:1001958 EFO:1001963 EFO:1002008 HP:0000028 HP:0000077 HP:0000078 HP:0000122 HP:0000138 HP:0000153 HP:0000160 HP:0000175 HP:0000194 HP:0000201 HP:0000219 HP:0000232 HP:0000248 HP:0000268 HP:0000272 HP:0000277 HP:0000280 HP:0000286 HP:0000307 HP:0000311 HP:0000316 HP:0000322 HP:0000331 HP:0000343 HP:0000347 HP:0000356 HP:0000358 HP:0000403 HP:0000405 HP:0000422 HP:0000431 HP:0000457 HP:0000463 HP:0000474 HP:0000483 HP:0000486 HP:0000490 HP:0000494 HP:0000506 HP:0000519 HP:0000527 HP:0000535 HP:0000572 HP:0000582 HP:0000588 HP:0000629 HP:0000664 HP:0000687 HP:0000708 HP:0000713 HP:0000718 HP:0000722 HP:0000729 HP:0000735 HP:0000736 HP:0000739 HP:0000750 HP:0000752 HP:0000767 HP:0000787 HP:0000817 HP:0000871 HP:0000921 HP:0000939 HP:0000953 HP:0000954 HP:0000957 HP:0000978 HP:0001028 HP:0001053 HP:0001182 HP:0001249 HP:0001250 HP:0001252 HP:0001256 HP:0001258 HP:0001263 HP:0001269 HP:0001270 HP:0001276 HP:0001328 HP:0001380 HP:0001382 HP:0001508 HP:0001510 HP:0001513 HP:0001622 HP:0001629 HP:0001631 HP:0001642 HP:0001643 HP:0001680 HP:0001782 HP:0001800 HP:0001824 HP:0001845 HP:0001848 HP:0001863 HP:0001864 HP:0001999 HP:0002013 HP:0002019 HP:0002020 HP:0002061 HP:0002062 HP:0002092 HP:0002123 HP:0002194 HP:0002208 HP:0002211 HP:0002232 HP:0002236 HP:0002307 HP:0002317 HP:0002353 HP:0002465 HP:0002474 HP:0002574 HP:0002705 HP:0002714 HP:0002757 HP:0002779 HP:0002926 HP:0003121 HP:0003125 HP:0003186 HP:0003196 HP:0003808 HP:0004322 HP:0004325 HP:0004349 HP:0004370 HP:0004474 HP:0004482 HP:0005180 HP:0005487 HP:0005831 HP:0006934 HP:0006986 HP:0007328 HP:0007526 HP:0007544 HP:0007663 HP:0007970 HP:0008115 HP:0008404 HP:0008551 HP:0008734 HP:0008935 HP:0009927 HP:0009928 HP:0009933 HP:0010562 HP:0010743 HP:0010751 HP:0010862 HP:0010863 HP:0011090 HP:0011123 HP:0011220 HP:0011311 HP:0011344 HP:0011471 HP:0011645 HP:0011800 HP:0011924 HP:0011968 HP:0012382 HP:0012443 HP:0012448 HP:0012450 HP:0012471 HP:0012646 HP:0012741 HP:0012745 HP:0030055 HP:0030190 HP:0030276 HP:0030517 HP:0040019 HP:0040199 HP:0100022 HP:0100033 HP:0100559 HP:0100814 HP:0100880 MONDO:0000430 MONDO:0000870 MONDO:0000872 MONDO:0002397 MONDO:0002601 MONDO:0002627 MONDO:0002630 MONDO:0002631 MONDO:0002678 MONDO:0002728 MONDO:0002924 MONDO:0003002 MONDO:0003142 MONDO:0003537 MONDO:0003572 MONDO:0003751 MONDO:0005005 MONDO:0005072 MONDO:0006058 MONDO:0007254 MONDO:0007255 MONDO:0007256 MONDO:0007257 MONDO:0007258 MONDO:0007259 MONDO:0007260 MONDO:0007261 MONDO:0007262 MONDO:0007263 MONDO:0007264 MONDO:0007265 MONDO:0007266 MONDO:0007267 MONDO:0007268 MONDO:0007269 MONDO:0007270 MONDO:0007271 MONDO:0007272 MONDO:0007273 MONDO:0007274 MONDO:0007275 MONDO:0007276 MONDO:0007277 MONDO:0007278 MONDO:0007279 MONDO:0007280 MONDO:0007281 MONDO:0007282 MONDO:0007283 MONDO:0007284 MONDO:0007285 MONDO:0007286 MONDO:0007287 MONDO:0007288 MONDO:0007289 MONDO:0007290 MONDO:0007291 MONDO:0007292 MONDO:0007293 MONDO:0007294 MONDO:0007295 MONDO:0007296 MONDO:0007297 MONDO:0007298 MONDO:0007299 MONDO:0007300 MONDO:0007301 MONDO:0007302 MONDO:0007303 MONDO:0007304 MONDO:0007305 MONDO:0007306 MONDO:0007307 MONDO:0007308 MONDO:0007309 MONDO:0007310 MONDO:0007311 MONDO:0007312 MONDO:0007313 MONDO:0007314 MONDO:0007315 MONDO:0007316 MONDO:0007317 MONDO:0007318 MONDO:0007319 MONDO:0007320 MONDO:0007321 MONDO:0007322 MONDO:0007323 MONDO:0007324 MONDO:0007325 MONDO:0007326 MONDO:0007327 MONDO:0007328 MONDO:0007329 MONDO:0007330 MONDO:0007331 MONDO:0007332 MONDO:0007333 MONDO:0007334 MONDO:0007335 MONDO:0007336 MONDO:0007337 MONDO:0007338 MONDO:0007339 MONDO:0007340 MONDO:0007341 MONDO:0007342 MONDO:0007343 MONDO:0007344 MONDO:0007345 MONDO:0007346 MONDO:0007347 MONDO:0007348 MONDO:0007349 MONDO:0007350 MONDO:0007351 MONDO:0007352 MONDO:0007353 MONDO:0007354 MONDO:0007355 MONDO:0007356 MONDO:0007357 MONDO:0007358 MONDO:0007359 MONDO:0007360 MONDO:0007361 MONDO:0007362 MONDO:0007363 MONDO:0007364 MONDO:0007365 MONDO:0007366 MONDO:0007367 MONDO:0007368 MONDO:0007369 MONDO:0007370 MONDO:0007371 MONDO:0007372 MONDO:0016690 MONDO:0016691 MONDO:0016692 MONDO:0016698 MONDO:0016700 MONDO:0016735 MONDO:0017043 MONDO:0017349 MONDO:0017387 MONDO:0018177 MONDO:0019457 MONDO:0019474 MONDO:0020511 MONDO:0020560 MONDO:0020580 MONDO:0020663 MONDO:0044335 MONDO:0100096 NCIT:C0549184 NCIT:C115935 NCIT:C27204 NCIT:C2952 NCIT:C3099 NCIT:C3283 Orphanet:110 Orphanet:124 Orphanet:183518 Orphanet:217569 Orphanet:2322 Orphanet:552 Orphanet:63 Orphanet:654 Orphanet:68367 Orphanet:791 Orphanet:811 Orphanet:886 Orphanet:98664 PATO:0000461 PATO:0000463 PATO:0000464 PATO:0000465 PATO:0000466 PATO:0000468 PATO:0000469 PATO:0000470 PATO:0000471 PATO:0000472 UBERON:0000178 UBERON:0000310 UBERON:0000397 UBERON:0000966 UBERON:0000992 UBERON:0001134 UBERON:0001156 UBERON:0001159 UBERON:0001968 UBERON:0002046 UBERON:0002107 UBERON:0002328 UBERON:0002371 UBERON:0002372 UBERON:0003483 UBERON:0003706 UBERON:0003707 UBERON:0003708 UBERON:0003709 UBERON:0003710 UBERON:0003711 UBERON:0003712 UBERON:0003713 UBERON:0003714 UBERON:0003715 UBERON:0003716 UBERON:0003717 UBERON:0003718 UBERON:0003719 UBERON:0003720 UBERON:0003721 UBERON:0003722 UBERON:0003723 UBERON:0003724 UBERON:0003725 UBERON:0003726 UBERON:0003727 UBERON:0003728 UBERON:0003729 UBERON:0003730 UBERON:0003731 UBERON:0003732 UBERON:0003889 UBERON:0005351 UBERON:0010393 UBERON:0012168 UBERON:0013756

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000044 0000045 0000046

Clear

10x Genomics Single Cell Gene Expression for SA1035X6XB03216

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA1035 passage 6
Dataset EGAD00001009154
10x Genomics Single Cell Gene Expression for SA535X5XB02895

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA535 passage 5
Dataset EGAD00001009156
10x Genomics Single Cell Gene Expression for SA604X9XB02425

10x Genomics Single Cell Gene Expression for Triple negative breast cancer patient-derived xenograft SA604 passage 9
Dataset EGAD00001009159
Single Cell Genome Sequence for DLP+ library A96130A

Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA609 passage 8 on DLP+ library A96130A
Dataset EGAD00001009454
Single Cell Genome Sequence for DLP+ library A96161A

Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA604 passage 8 on DLP+ library A96161A
Dataset EGAD00001009457
Single Cell Genome Sequence for DLP+ library A96175A

Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA604 passage 7 on DLP+ library A96175A
Dataset EGAD00001009461
Single Cell Genome Sequence for DLP+ library A96180A

Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA604 passage 6 on DLP+ library A96180A
Dataset EGAD00001009463
Single Cell Genome Sequence for DLP+ library A98240A

Single Cell Genome Sequence for triple negative breast cancer patient-derived xenograft SA530 passage 3 on DLP+ library A98240A
Dataset EGAD00001009480
Organoid Derivation Project: WGS (2023-06-22)

Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients. . This dataset contains all the data available for this study on 2023-06-22.
Dataset EGAD00001011090
Sequencing data for oesophageal samples - Killcoyne, Gregson et al (sWGS)

Data supporting: "Genomic copy number predicts esophageal cancer years before transformation." Killcoyne, Gregson et al. sWGS data 1000 samples BAM files
Dataset EGAD00001006033

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