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5707 results for "canc*"

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General Study Dataset

Type

blog dac dataset documentation study

Repository

dbgap ega jga

Study type

affected sib pairs aggregate genomic data atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family forensic or paleo-genomics full transcriptome sequencing genotype genotype/expression gwas hi-c individual-level genomic data longitudinal longitudinal cohort marker discovery meta-analysis metagenomics metastasis methods development multi-omics data nested case-control nuclear families observational other parent-offspring parent-offspring trios partial factorial randomized population population genomics prospective randomized reference set repertoire sequencing (tumor vs. matched-normal) resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequencing target capture sequencing target sequencing targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal whole genome sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs flx titanium ab 3730xl genetic analyzer ab 5500 genetic analyzer ab 5500xl genetic analyzer ab 5500xl-w genetic analysis system ab solid 4 system ab solid system abi_solid affymetrics_snp_6.0- affymetrix 6.0 array affymetrix snp 6.0 affymetrix snp6.0 affymetrix_snp6- agilent aperio aperio image - h&e stained tissue_section beadarray bgiseq-500 complete genomics cytoscan epic beadchip (illumina, san diego, ca) exiqon 7th generation mircury lna microrna microarray system genechip human mapping 250k nspi genome-wide human snp array 6.0 - thermo fisher scientific gridion gsa-md v3 h and e image helicos heliscope hiseq x five hiseq x ten illumina illumina 15k illumina 2.5m illumina 450k illumina 850k illumina cytosnp 12 bead array illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina hiscan illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2000;illumina illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina ht 12 illumina humanexome array illumina humanmethylationepic v1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium human global screening array gsamd-24v2-0_20024620_a1 beadchip illumina infinium humanmethylation450k illumina infinium methylationepic 850k illumina infinium methylationepic beadchip (850 k) illumina methylationepic array illumina miseq illumina novaseq 6000 illumina oncoarray illuminahuman awg-6 and ht12 illuminahuman ht12 infinium methylationepic beadchip array ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl life tech - solid minion miseq nanostring nanostring cancer immune nanostring cancer pathway nanostring ncounterâ® pancancer io 360â„¢ nanostring panel nextseq 2000 nextseq 500 nextseq 550 novaseq 6000 oligonucleotide beads of humanht-12 v4 r2 expression beadchips (illumina) oncoscan pacbio rs pacbio rs ii promethion qexactive plus sequel snp array unspecified

Phenotypes

[CL:0000038] [CL:0000050] [CL:0000499] [CL:0000523] [CL:0000557] [CL:0000576] [CL:0000893] [CL:0001024] [CL:0001059] [CL:0002324] [CL:0002326] [CL:0002420] [CL:0002489] [CL:0002555] [CL:0010004] [CL:2000006] [EFO:0000094] [EFO:0000174] [EFO:0000182] [EFO:0000183] [EFO:0000196] [EFO:0000220] [EFO:0000222] [EFO:0000228] [EFO:0000239] [EFO:0000248] [EFO:0000292] [EFO:0000305] [EFO:0000308] [EFO:0000309] [EFO:0000310] [EFO:0000311] [EFO:0000312] [EFO:0000313] [EFO:0000314] [EFO:0000315] [EFO:0000316] [EFO:0000317] [EFO:0000318] [EFO:0000319] [EFO:0000320] [EFO:0000321] [EFO:0000322] [EFO:0000323] [EFO:0000324] [EFO:0000325] [EFO:0000326] [EFO:0000327] [EFO:0000328] [EFO:0000329] [EFO:0000330] [EFO:0000331] [EFO:0000332] [EFO:0000333] [EFO:0000334] [EFO:0000335] [EFO:0000336] [EFO:0000337] [EFO:0000338] [EFO:0000339] [EFO:0000340] [EFO:0000341] [EFO:0000342] [EFO:0000343] [EFO:0000344] [EFO:0000345] [EFO:0000346] [EFO:0000347] [EFO:0000348] [EFO:0000349] [EFO:0000350] [EFO:0000351] [EFO:0000352] [EFO:0000353] [EFO:0000354] [EFO:0000355] [EFO:0000356] [EFO:0000357] [EFO:0000358] [EFO:0000359] [EFO:0000360] [EFO:0000361] [EFO:0000362] [EFO:0000363] [EFO:0000364] [EFO:0000365] [EFO:0000366] [EFO:0000367] [EFO:0000368] [EFO:0000369] [EFO:0000370] [EFO:0000371] [EFO:0000372] [EFO:0000373] [EFO:0000374] [EFO:0000402] [EFO:0000403] [EFO:0000437] [EFO:0000502] [EFO:0000503] [EFO:0000519] [EFO:0000571] [EFO:0000616] [EFO:0000621] [EFO:0000637] [EFO:0000641] [EFO:0000681] [EFO:0000691] [EFO:0000693] [EFO:0000702] [EFO:0000708] [EFO:0000730] [EFO:0000756] [EFO:0000760] [EFO:0000761] [EFO:0000762] [EFO:0000848] [EFO:0000869] [EFO:0000887] [EFO:0000934] [EFO:0000973] [EFO:0000980] [EFO:0001071] [EFO:0001075] [EFO:0001376] [EFO:0001378] [EFO:0001461] [EFO:0001639] [EFO:0001663] [EFO:0002394] [EFO:0002422] [EFO:0002424] [EFO:0002618] [EFO:0002787] [EFO:0002793] [EFO:0002916] [EFO:0002918] [EFO:0002939] [EFO:0003032] [EFO:0003060] [EFO:0003094] [EFO:0003137] [EFO:0003825] [EFO:0003897] [EFO:0003942] [EFO:0004422] [EFO:0004708] [EFO:0005235] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005701] [EFO:0005842] [EFO:0005844] [EFO:0006460] [EFO:0006545] [EFO:0006852] [EFO:0007143] [EFO:0007336] [EFO:0007365] [EFO:0007483] [EFO:0008498] [EFO:0008524] [EFO:0009052] [EFO:0009119] [EFO:0009120] [EFO:0009121] [EFO:0009375] [EFO:0009443] [EFO:0009744] [EFO:0009907] [EFO:1000028] [EFO:1000042] [EFO:1000043] [EFO:1000069] [EFO:1000075] [EFO:1000101] [EFO:1000138] [EFO:1000139] [EFO:1000144] [EFO:1000149] [EFO:1000231] [EFO:1000238] [EFO:1000292] [EFO:1000307] [EFO:1000318] [EFO:1000414] [EFO:1000416] [EFO:1000429] [EFO:1000646] [EFO:1000796] [EFO:1001038] [EFO:1001100] [EFO:1001480] [EFO:1001514] [EFO:1001515] [EFO:1001938] [EFO:1001946] [EFO:1001950] [EFO:1001951] [EFO:1001956] [EFO:1001958] [EFO:1001963] [EFO:1002008] [HP:0002716] [HP:0100880] [MONDO:0000430] [MONDO:0002397] [MONDO:0002601] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0002678] [MONDO:0002924] [MONDO:0003002] [MONDO:0003142] [MONDO:0003537] [MONDO:0003572] [MONDO:0003751] [MONDO:0006058] [MONDO:0007254] [MONDO:0007255] [MONDO:0007256] [MONDO:0007257] [MONDO:0007258] [MONDO:0007259] [MONDO:0007260] [MONDO:0007261] [MONDO:0007262] [MONDO:0007263] [MONDO:0007264] [MONDO:0007265] [MONDO:0007266] [MONDO:0007267] [MONDO:0007268] [MONDO:0007269] [MONDO:0007270] [MONDO:0007271] [MONDO:0007272] [MONDO:0007273] [MONDO:0007274] [MONDO:0007275] [MONDO:0007276] [MONDO:0007277] [MONDO:0007278] [MONDO:0007279] [MONDO:0007280] [MONDO:0007281] [MONDO:0007282] [MONDO:0007283] [MONDO:0007284] [MONDO:0007285] [MONDO:0007286] [MONDO:0007287] [MONDO:0007288] [MONDO:0007289] [MONDO:0007290] [MONDO:0007291] [MONDO:0007292] [MONDO:0007293] [MONDO:0007294] [MONDO:0007295] [MONDO:0007296] [MONDO:0007297] [MONDO:0007298] [MONDO:0007299] [MONDO:0007300] [MONDO:0007301] [MONDO:0007302] [MONDO:0007303] [MONDO:0007304] [MONDO:0007305] [MONDO:0007306] [MONDO:0007307] [MONDO:0007308] [MONDO:0007309] [MONDO:0007310] [MONDO:0007311] [MONDO:0007312] [MONDO:0007313] [MONDO:0007314] [MONDO:0007315] [MONDO:0007316] [MONDO:0007317] [MONDO:0007318] [MONDO:0007319] [MONDO:0007320] [MONDO:0007321] [MONDO:0007322] [MONDO:0007323] [MONDO:0007324] [MONDO:0007325] [MONDO:0007326] [MONDO:0007327] [MONDO:0007328] [MONDO:0007329] [MONDO:0007330] [MONDO:0007331] [MONDO:0007332] [MONDO:0007333] [MONDO:0007334] [MONDO:0007335] [MONDO:0007336] [MONDO:0007337] [MONDO:0007338] [MONDO:0007339] [MONDO:0007340] [MONDO:0007341] [MONDO:0007342] [MONDO:0007343] [MONDO:0007344] [MONDO:0007345] [MONDO:0007346] [MONDO:0007347] [MONDO:0007348] [MONDO:0007349] [MONDO:0007350] [MONDO:0007351] [MONDO:0007352] [MONDO:0007353] [MONDO:0007354] [MONDO:0007355] [MONDO:0007356] [MONDO:0007357] [MONDO:0007358] [MONDO:0007359] [MONDO:0007360] [MONDO:0007361] [MONDO:0007362] [MONDO:0007363] [MONDO:0007364] [MONDO:0007365] [MONDO:0007366] [MONDO:0007367] [MONDO:0007368] [MONDO:0007369] [MONDO:0007370] [MONDO:0007371] [MONDO:0007372] [MONDO:0016690] [MONDO:0016691] [MONDO:0016692] [MONDO:0016700] [MONDO:0016735] [MONDO:0017349] [MONDO:0017387] [MONDO:0018177] [MONDO:0019457] [MONDO:0019474] [MONDO:0020511] [MONDO:0020580] [MONDO:0020663] [MONDO:0044335] [Orphanet:654] [PATO:0000461] [UBERON:0000178] [UBERON:0000310] [UBERON:0000992] [UBERON:0001134] [UBERON:0001156] [UBERON:0001159] [UBERON:0001968] [UBERON:0002046] [UBERON:0002328] [UBERON:0003889] [UBERON:0010393]

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000045 0000046

Clear

EGAD00000000013

WTCCC1 project Breast cancer (BC) samples
Dataset EGAD00000000013
EGAD00000000048

Sequencing data from oestrogen-receptor-alpha-positive metastatic lobular breast cancer sample
Dataset EGAD00000000048
EGAD00000000049

RNA-SEQ data from oestrogen-receptor-alpha-positive metastatic lobular breast cancer sample
Dataset EGAD00000000049
EGAD00000000053

Sequencing data from Breast Cancer samples
Dataset EGAD00000000053
EGAD00000000054

NCI-H209 is an immortal cell line derived from a bone marrow metastasis of a patient with small cell lung cancer, taken before chemotherapy. The specimen showed histologically typical small cells with classic neuroendocrine features. NCI-BL209 is an EBV-transformed B-cell line derived from the same patient as the small cell lung cancer cell line, NCI-H209
Dataset EGAD00000000054
COLO-829/COLO-829BL

COLO-829 is a publicly available immortal cancer cell line and COLO-829BL is a lymphoblastoid cell line derived from the same patient
Dataset EGAD00000000055
EGAD00010000622

SNP array data for gastric cancer cell lines
Dataset EGAD00010000622
EGAD00010000644

Affymetrix SNP6.0 cancer cell line exome sequencing data
Dataset EGAD00010000644
EGAD00010000266

Metabric breast cancer samples (Genotype raw data)
Dataset EGAD00010000266
EGAD00010000268

Metabric breast cancer samples (Expression raw data)
Dataset EGAD00010000268
EGAD00010000270

Metabric breast cancer samples (Images)
Dataset EGAD00010000270
EGAD00010000474

blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 2 (CC2)
Dataset EGAD00010000474
EGAD00010000476

blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 1 (CC1)
Dataset EGAD00010000476
EGAD00010000478

blood-based gene expression from breast cancer cases and age-matched controls in case-control serie 3 (CC3)
Dataset EGAD00010000478
EGAD00010000498

Affymetrix SNP6.0 genotype data for prostate cancer patients
Dataset EGAD00010000498
EGAD00010000526

SNP 6.0 arrays of small cell lung cancer
Dataset EGAD00010000526

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