3735 results for "*oma"

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• Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma

  Sequence reads for pediatric GBM samples for manuscript: Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma

  Dataset EGAD00001000134

• DATA FILES FOR NBL

  Neuroblastoma whole genome sequencing

  Dataset EGAD00001000135

• Tumor sample of a serious ovarian carcinoma

  Tumor sample of a serious ovarian carcinoma

  Dataset EGAD00001000139

• Osteosarcoma Whole Genome

  Osteosarcoma Whole Genome

  Dataset EGAD00001000147

• Subgroup-specific structural variation across 1,000 medulloblastoma genomes

  Subgroup-specific structural variation across 1,000 medulloblastoma genomes

  Dataset EGAD00001000158

• Whole Genome Sequencing accompanying Genetic landscape of pediatric Rhabdomyosarcoma

  Whole Genome Sequencing accompanying Genetic landscape of pediatric Rhabdomyosarcoma.

  Dataset EGAD00001000164

• Identification of SPEN as a novel cancer gene and FGFR2 as a potential therapeutic target in adenoid cystic carcinoma

  Identification of SPEN as a novel cancer gene and FGFR2 as a potential therapeutic target in adenoid cystic carcinoma

  Dataset EGAD00001000175

• UK10K_RARE_COLOBOMA REL-2012-01-13

  UK10K_RARE_COLOBOMA REL-2012-01-13

  Dataset EGAD00001000179

• UK10K_RARE_COLOBOMA REL-2012-02-22

  UK10K_RARE_COLOBOMA REL-2012-02-22

  Dataset EGAD00001000185

• Neuroblastoma samples

  Neuroblastoma samples

  Dataset EGAD00001000196

• Neuroblastoma samples (Analyses_vcf files)

  Neuroblastoma samples (Analyses_vcf files)

  Dataset EGAD00001000202

• UK10K_RARE_COLOBOMA REL-2012-07-05

  UK10K_RARE_COLOBOMA REL-2012-07-05

  Dataset EGAD00001000206

• A common single nucleotide variant in T is strongly associated with chordoma

  Chordoma is a rare malignant bone tumor that expresses the transcription factor T. We conducted an association study of 40 patients with chordoma and 358 ancestry-matched, unaffected individuals with replication in an independent cohort. Whole-exome and Sanger sequencing of T exons reveals a strong risk association ( allelic odds ratio (OR) = 4.9, P = 3.3x10-11, CI= 2.9-8.1) with the common (minor allelic frequency >5%) non-synonymous SNP rs2305089 in chordoma, which is exceptional in cancer genetics.

  Dataset EGAD00001000226

• Melanoma-TIL Study Exomes

  Melanoma-TIL Study Exomes

  Dataset EGAD00001000243

• Integrative Oncogenomics of multiple myeloma

  Integrative Oncogenomics of multiple myeloma

  Dataset EGAD00001000246

• Integrative Oncogenomics of multiple myeloma

  Integrative Oncogenomics of multiple myeloma

  Dataset EGAD00001000247

• DATA FILES FOR SJRB

  Retinoblastoma whole genome sequencing

  Dataset EGAD00001000261

• Chondrosarcoma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Chondrosarcoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000265

• Osteosarcoma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Osteosarcoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000266

• Chordoma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Chordoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000267

• Pilot study Pilocytic Astrocytoma ICGC PedBrain, whole genome sequencing of 5 tumors and matched blood

  Pilot study Pilocytic Astrocytoma ICGC PedBrain, whole genome sequencing of 5 tumors and matched blood

  Dataset EGAD00001000271

• Meningioma Targeted Sequencing Study

  This Study uses a focused bespoke bait pull down library method to target findings of Meningioma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these findings in a larger set of patient samples.

  Dataset EGAD00001000273

• Data set for Whole-genome-Sequencing of adult medulloblastoma

  Data set for Whole-genome-Sequencing of adult medulloblastoma

  Dataset EGAD00001000275

• SCAT_Osteosarcoma_Validation

  This experiment is to validate putative somatic substitutions and indels identified in an exome screen of ~50 osteosarcoma tumour/normal pairs. It is the first stage in our ICGC commitment to study osteosarcoma. The validation process is an important component of our analysis to clarify the data prior to looking for evidence of new cancer genes, or subverted pathways important in the development of cancer. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

  Dataset EGAD00001000280

• Whole genome analyses of the childhood cancer neuroblastoma

  Neuroblastomas are tumors of peripheral sympathetic neurons and are the most common solid tumor in children. To determine the genetic basis for neuroblastoma we performed whole-genome sequencing (6 cases), exome sequencing (16 cases), genome-wide rearrangement analyses (32 cases), and targeted analyses of specific genomic loci (40 cases) using massively parallel sequencing. On average each tumor had 19 somatic alterations in coding genes (range, 3-70). Among genes not previously known to be involved in neuroblastoma, chromosomal deletions and sequence alterations of chromatin remodeling genes, ARID1A and ARID1B, were identified in 8 of 71 tumors (11%) and were associated with early treatment failure and decreased survival. Using tumor-specific structural alterations, we developed an approach to identify rearranged DNA fragments in sera, providing personalized biomarkers for minimal residual disease detection and monitoring. These results highlight dysregulation of chromatin remodeling in pediatric tumorigenesis and provide new approaches for the management of neuroblastoma patients.

  Dataset EGAD00001000282