About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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SYNTHETIC DATA: EOSC4Cancer Colorectal Cancer (CRC) synthetic Whole Genome Sequencing dataset

This dataset contains 10 tumor and normal pairs synthetic WGS data of colorectal cancer that were simulated in a standard format of Illumina paired-end reads. NEAT read simulator (version 3.0, https://github.com/zstephens/neat-genreads) is utilized to synthetize these 10 pairs tumor and normal WGS data. In the procedure of data generation, simulated parameters (i.e., sequencing error statistics, read fragment length distribution and GC% coverage bias) are learned from data models provided by NEAT. The average sequencing depth for tumor and normal samples aims to reach around 110X and 60X, respectively. For generation of synthetic normal WGS data per each sample, a germline variant profile from a real patient is down-sampled randomly, which includes 50% germline variants of such a patient. It is then mixed together with an in silico germline variant profile that is modelled randomly using an average mutation rate (0.001), finally constituting a full germline profile for normal synthetic WGS data. For generation of synthetic tumor WGS data per each sample, a pre-defined somatic short variant profile (SNVs+Indels) learn from a real CRC patient is added to the germline variant profile used for creating normal synthetic WGS data of the same patient, which is utilized to produce simulated sequences. Neither copy number profile nor structural variation profile is introduced into the tumor synthetic WGS data. Tumor content and ploidy are assumed to be 100% and 2.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

Access policy for SYNTHETIC DATA in FEGA Norway test instance

The synthetic data is approved for research and explorations of data sharing infrastructures and bioinformatics workflows.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000386 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000105649 fastq.gz 6.5 GB
Federated EGA
EGAF50000105650 fastq.gz 6.5 GB
Federated EGA
EGAF50000105651 fastq.gz 6.5 GB
Federated EGA
EGAF50000105652 fastq.gz 6.5 GB
Federated EGA
EGAF50000105653 fastq.gz 6.5 GB
Federated EGA
EGAF50000105654 fastq.gz 6.5 GB
Federated EGA
EGAF50000105655 fastq.gz 6.5 GB
Federated EGA
EGAF50000105656 fastq.gz 6.5 GB
Federated EGA
EGAF50000105657 fastq.gz 11.9 GB
Federated EGA
EGAF50000105658 fastq.gz 11.9 GB
Federated EGA
EGAF50000105659 fastq.gz 11.9 GB
Federated EGA
EGAF50000105660 fastq.gz 11.9 GB
Federated EGA
EGAF50000105661 fastq.gz 11.9 GB
Federated EGA
EGAF50000105662 fastq.gz 11.9 GB
Federated EGA
EGAF50000105663 fastq.gz 11.9 GB
Federated EGA
EGAF50000105664 fastq.gz 11.9 GB
Federated EGA
EGAF50000105666 fastq.gz 6.5 GB
Federated EGA
EGAF50000105667 fastq.gz 6.5 GB
Federated EGA
EGAF50000105668 fastq.gz 6.5 GB
Federated EGA
EGAF50000105669 fastq.gz 6.5 GB
Federated EGA
EGAF50000105670 fastq.gz 6.5 GB
Federated EGA
EGAF50000105671 fastq.gz 6.5 GB
Federated EGA
EGAF50000105672 fastq.gz 6.5 GB
Federated EGA
EGAF50000105673 fastq.gz 6.5 GB
Federated EGA
EGAF50000105674 fastq.gz 11.9 GB
Federated EGA
EGAF50000105675 fastq.gz 11.9 GB
Federated EGA
EGAF50000105676 fastq.gz 11.9 GB
Federated EGA
EGAF50000105677 fastq.gz 11.9 GB
Federated EGA
EGAF50000105678 fastq.gz 11.9 GB
Federated EGA
EGAF50000105679 fastq.gz 11.9 GB
Federated EGA
EGAF50000105680 fastq.gz 11.9 GB
Federated EGA
EGAF50000105681 fastq.gz 11.9 GB
Federated EGA
EGAF50000105682 fastq.gz 6.6 GB
Federated EGA
EGAF50000105683 fastq.gz 6.6 GB
Federated EGA
EGAF50000105684 fastq.gz 6.6 GB
Federated EGA
EGAF50000105685 fastq.gz 6.6 GB
Federated EGA
EGAF50000105686 fastq.gz 6.6 GB
Federated EGA
EGAF50000105687 fastq.gz 6.6 GB
Federated EGA
EGAF50000105688 fastq.gz 6.6 GB
Federated EGA
EGAF50000105689 fastq.gz 6.6 GB
Federated EGA
EGAF50000105690 fastq.gz 12.0 GB
Federated EGA
EGAF50000105691 fastq.gz 12.0 GB
Federated EGA
EGAF50000105692 fastq.gz 12.0 GB
Federated EGA
EGAF50000105693 fastq.gz 12.0 GB
Federated EGA
EGAF50000105694 fastq.gz 12.0 GB
Federated EGA
EGAF50000105695 fastq.gz 12.0 GB
Federated EGA
EGAF50000105696 fastq.gz 12.0 GB
Federated EGA
EGAF50000105697 fastq.gz 12.0 GB
Federated EGA
EGAF50000105698 fastq.gz 6.6 GB
Federated EGA
EGAF50000105699 fastq.gz 6.6 GB
Federated EGA
EGAF50000105700 fastq.gz 6.6 GB
Federated EGA
EGAF50000105701 fastq.gz 6.6 GB
Federated EGA
EGAF50000105702 fastq.gz 6.6 GB
Federated EGA
EGAF50000105703 fastq.gz 6.6 GB
Federated EGA
EGAF50000105704 fastq.gz 6.6 GB
Federated EGA
EGAF50000105705 fastq.gz 6.6 GB
Federated EGA
EGAF50000105706 fastq.gz 12.0 GB
Federated EGA
EGAF50000105707 fastq.gz 12.0 GB
Federated EGA
EGAF50000105708 fastq.gz 12.0 GB
Federated EGA
EGAF50000105709 fastq.gz 12.0 GB
Federated EGA
EGAF50000105710 fastq.gz 12.0 GB
Federated EGA
EGAF50000105711 fastq.gz 12.0 GB
Federated EGA
EGAF50000105712 fastq.gz 12.0 GB
Federated EGA
EGAF50000105713 fastq.gz 12.0 GB
Federated EGA
EGAF50000105714 fastq.gz 6.6 GB
Federated EGA
EGAF50000105715 fastq.gz 6.6 GB
Federated EGA
EGAF50000105716 fastq.gz 6.6 GB
Federated EGA
EGAF50000105717 fastq.gz 6.6 GB
Federated EGA
EGAF50000105718 fastq.gz 6.6 GB
Federated EGA
EGAF50000105719 fastq.gz 6.6 GB
Federated EGA
EGAF50000105720 fastq.gz 6.6 GB
Federated EGA
EGAF50000105721 fastq.gz 6.6 GB
Federated EGA
EGAF50000105722 fastq.gz 12.0 GB
Federated EGA
EGAF50000105723 fastq.gz 12.0 GB
Federated EGA
EGAF50000105724 fastq.gz 12.0 GB
Federated EGA
EGAF50000105725 fastq.gz 12.0 GB
Federated EGA
EGAF50000105726 fastq.gz 12.0 GB
Federated EGA
EGAF50000105727 fastq.gz 12.0 GB
Federated EGA
EGAF50000105728 fastq.gz 12.0 GB
Federated EGA
EGAF50000105729 fastq.gz 12.0 GB
Federated EGA
EGAF50000105730 fastq.gz 6.6 GB
Federated EGA
EGAF50000105731 fastq.gz 6.6 GB
Federated EGA
EGAF50000105732 fastq.gz 6.6 GB
Federated EGA
EGAF50000105733 fastq.gz 6.6 GB
Federated EGA
EGAF50000105734 fastq.gz 6.6 GB
Federated EGA
EGAF50000105735 fastq.gz 6.6 GB
Federated EGA
EGAF50000105736 fastq.gz 6.6 GB
Federated EGA
EGAF50000105737 fastq.gz 6.6 GB
Federated EGA
EGAF50000105738 fastq.gz 12.0 GB
Federated EGA
EGAF50000105739 fastq.gz 12.0 GB
Federated EGA
EGAF50000105740 fastq.gz 12.0 GB
Federated EGA
EGAF50000105741 fastq.gz 12.0 GB
Federated EGA
EGAF50000105742 fastq.gz 12.0 GB
Federated EGA
EGAF50000105743 fastq.gz 12.0 GB
Federated EGA
EGAF50000105744 fastq.gz 12.0 GB
Federated EGA
EGAF50000105745 fastq.gz 12.0 GB
Federated EGA
EGAF50000105746 fastq.gz 6.6 GB
Federated EGA
EGAF50000105747 fastq.gz 6.6 GB
Federated EGA
EGAF50000105748 fastq.gz 6.6 GB
Federated EGA
EGAF50000105749 fastq.gz 6.6 GB
Federated EGA
EGAF50000105750 fastq.gz 6.6 GB
Federated EGA
EGAF50000105751 fastq.gz 6.6 GB
Federated EGA
EGAF50000105752 fastq.gz 6.6 GB
Federated EGA
EGAF50000105753 fastq.gz 6.6 GB
Federated EGA
EGAF50000105754 fastq.gz 12.0 GB
Federated EGA
EGAF50000105755 fastq.gz 12.0 GB
Federated EGA
EGAF50000105756 fastq.gz 12.0 GB
Federated EGA
EGAF50000105757 fastq.gz 12.0 GB
Federated EGA
EGAF50000105758 fastq.gz 12.0 GB
Federated EGA
EGAF50000105759 fastq.gz 12.0 GB
Federated EGA
EGAF50000105760 fastq.gz 12.0 GB
Federated EGA
EGAF50000105761 fastq.gz 12.0 GB
Federated EGA
EGAF50000105762 fastq.gz 6.5 GB
Federated EGA
EGAF50000105763 fastq.gz 6.5 GB
Federated EGA
EGAF50000105764 fastq.gz 6.5 GB
Federated EGA
EGAF50000105765 fastq.gz 6.5 GB
Federated EGA
EGAF50000105766 fastq.gz 6.5 GB
Federated EGA
EGAF50000105767 fastq.gz 6.5 GB
Federated EGA
EGAF50000105768 fastq.gz 6.5 GB
Federated EGA
EGAF50000105769 fastq.gz 6.5 GB
Federated EGA
EGAF50000105770 fastq.gz 11.9 GB
Federated EGA
EGAF50000105771 fastq.gz 11.9 GB
Federated EGA
EGAF50000105772 fastq.gz 11.9 GB
Federated EGA
EGAF50000105773 fastq.gz 11.9 GB
Federated EGA
EGAF50000105774 fastq.gz 11.9 GB
Federated EGA
EGAF50000105775 fastq.gz 11.9 GB
Federated EGA
EGAF50000105776 fastq.gz 11.9 GB
Federated EGA
EGAF50000105777 fastq.gz 11.9 GB
Federated EGA
EGAF50000105779 fastq.gz 6.6 GB
Federated EGA
EGAF50000105780 fastq.gz 6.6 GB
Federated EGA
EGAF50000105781 fastq.gz 6.6 GB
Federated EGA
EGAF50000105782 fastq.gz 6.6 GB
Federated EGA
EGAF50000105783 fastq.gz 6.6 GB
Federated EGA
EGAF50000105784 fastq.gz 6.6 GB
Federated EGA
EGAF50000105785 fastq.gz 6.6 GB
Federated EGA
EGAF50000105786 fastq.gz 6.6 GB
Federated EGA
EGAF50000105787 fastq.gz 12.0 GB
Federated EGA
EGAF50000105788 fastq.gz 12.0 GB
Federated EGA
EGAF50000105789 fastq.gz 12.0 GB
Federated EGA
EGAF50000105790 fastq.gz 12.0 GB
Federated EGA
EGAF50000105791 fastq.gz 12.0 GB
Federated EGA
EGAF50000105792 fastq.gz 12.0 GB
Federated EGA
EGAF50000105793 fastq.gz 12.0 GB
Federated EGA
EGAF50000105794 fastq.gz 12.0 GB
Federated EGA
EGAF50000105795 fastq.gz 6.6 GB
Federated EGA
EGAF50000105796 fastq.gz 6.6 GB
Federated EGA
EGAF50000105797 fastq.gz 6.6 GB
Federated EGA
EGAF50000105798 fastq.gz 6.6 GB
Federated EGA
EGAF50000105799 fastq.gz 6.6 GB
Federated EGA
EGAF50000105800 fastq.gz 6.6 GB
Federated EGA
EGAF50000105801 fastq.gz 6.6 GB
Federated EGA
EGAF50000105802 fastq.gz 6.6 GB
Federated EGA
EGAF50000105803 fastq.gz 12.0 GB
Federated EGA
EGAF50000105804 fastq.gz 12.0 GB
Federated EGA
EGAF50000105805 fastq.gz 12.0 GB
Federated EGA
EGAF50000105806 fastq.gz 12.0 GB
Federated EGA
EGAF50000105807 fastq.gz 12.0 GB
Federated EGA
EGAF50000105808 fastq.gz 12.0 GB
Federated EGA
EGAF50000105809 fastq.gz 12.0 GB
Federated EGA
EGAF50000105810 fastq.gz 12.0 GB
Federated EGA
EGAF50000105811 tbi 1.9 MB
Federated EGA
EGAF50000105812 vcf.gz 282.5 MB
Federated EGA
EGAF50000105813 csv 605 Bytes
Federated EGA
EGAF50000106043 vcf.gz 30.1 MB
Federated EGA
EGAF50000106044 vcf.gz 30.0 MB
Federated EGA
EGAF50000106045 vcf.gz 30.0 MB
Federated EGA
EGAF50000106046 vcf.gz 30.1 MB
Federated EGA
EGAF50000106047 vcf.gz 30.2 MB
Federated EGA
EGAF50000106048 vcf.gz 30.1 MB
Federated EGA
EGAF50000106049 vcf.gz 30.1 MB
Federated EGA
EGAF50000106050 vcf.gz 30.1 MB
Federated EGA
EGAF50000106051 vcf.gz 30.0 MB
Federated EGA
EGAF50000106052 vcf.gz 30.0 MB
Federated EGA
EGAF50000106053 vcf.gz 193.6 kB
Federated EGA
EGAF50000106054 vcf.gz 229.9 kB
Federated EGA
EGAF50000106055 vcf.gz 223.4 kB
Federated EGA
EGAF50000106056 vcf.gz 953.4 kB
Federated EGA
EGAF50000106057 vcf.gz 209.1 kB
Federated EGA
EGAF50000106058 vcf.gz 232.4 kB
Federated EGA
EGAF50000106059 vcf.gz 200.4 kB
Federated EGA
EGAF50000106060 vcf.gz 142.1 kB
Federated EGA
EGAF50000106061 vcf.gz 306.1 kB
Federated EGA
EGAF50000106062 vcf.gz 187.1 kB
Federated EGA
183 Files (1.5 TB)