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VRK3 depletion in Pontine Diffuse Midline Glioma DMG-K27 altered cells

In order to investigate possible mechanisms underlying the phenotype of cell fitness decline observed following decrease of VRK3 in pontine DMG-K27 altered cells 7, we examined differences in global gene expression. RNA-seq was performed 44h and 60h post-transduction with two distinct shRNAs targeting VRK3 to be able to evaluate the early impact of VRK3 knock-down (KD) in four independent in vitro models of DMG

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DUO:0000045 DUO:0000046 DUO:0000024 DUO:0000020

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007047 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007956472 fastq.gz 4.1 GB
EGAF00007956473 fastq.gz 4.3 GB
EGAF00007956474 fastq.gz 1.9 GB
EGAF00007956475 fastq.gz 1.9 GB
EGAF00007956476 fastq.gz 2.9 GB
EGAF00007956477 fastq.gz 3.0 GB
EGAF00007956478 fastq.gz 2.1 GB
EGAF00007956479 fastq.gz 2.1 GB
EGAF00007956480 fastq.gz 2.9 GB
EGAF00007956481 fastq.gz 2.9 GB
EGAF00007956482 fastq.gz 2.4 GB
EGAF00007956483 fastq.gz 2.5 GB
EGAF00007956484 fastq.gz 3.4 GB
EGAF00007956485 fastq.gz 3.5 GB
EGAF00007956486 fastq.gz 2.4 GB
EGAF00007956487 fastq.gz 2.4 GB
EGAF00007956488 fastq.gz 1.4 GB
EGAF00007956489 fastq.gz 1.5 GB
EGAF00007956490 fastq.gz 1.7 GB
EGAF00007956491 fastq.gz 1.8 GB
EGAF00007956492 fastq.gz 3.0 GB
EGAF00007956493 fastq.gz 3.0 GB
EGAF00007956494 fastq.gz 3.0 GB
EGAF00007956495 fastq.gz 3.0 GB
EGAF00007956496 fastq.gz 2.3 GB
EGAF00007956497 fastq.gz 2.4 GB
EGAF00007956498 fastq.gz 2.5 GB
EGAF00007956499 fastq.gz 2.6 GB
EGAF00007956500 fastq.gz 3.8 GB
EGAF00007956501 fastq.gz 3.9 GB
EGAF00007956502 fastq.gz 1.4 GB
EGAF00007956503 fastq.gz 1.5 GB
EGAF00007956504 fastq.gz 3.0 GB
EGAF00007956505 fastq.gz 3.1 GB
EGAF00007956506 fastq.gz 2.1 GB
EGAF00007956507 fastq.gz 2.1 GB
EGAF00007956508 fastq.gz 2.8 GB
EGAF00007956509 fastq.gz 2.9 GB
EGAF00007956510 fastq.gz 1.4 GB
EGAF00007956511 fastq.gz 1.4 GB
EGAF00007956512 fastq.gz 2.4 GB
EGAF00007956513 fastq.gz 2.5 GB
EGAF00007956514 fastq.gz 1.8 GB
EGAF00007956515 fastq.gz 1.8 GB
EGAF00007956516 fastq.gz 1.2 GB
EGAF00007956517 fastq.gz 1.2 GB
EGAF00007956518 fastq.gz 3.1 GB
EGAF00007956519 fastq.gz 3.2 GB
EGAF00007956520 fastq.gz 3.6 GB
EGAF00007956521 fastq.gz 3.7 GB
EGAF00007956522 fastq.gz 2.9 GB
EGAF00007956523 fastq.gz 2.9 GB
EGAF00007956524 fastq.gz 2.8 GB
EGAF00007956525 fastq.gz 2.9 GB
EGAF00007956526 fastq.gz 3.5 GB
EGAF00007956527 fastq.gz 3.6 GB
EGAF00007956528 fastq.gz 1.4 GB
EGAF00007956529 fastq.gz 1.4 GB
EGAF00007956530 fastq.gz 2.0 GB
EGAF00007956531 fastq.gz 2.0 GB
EGAF00007956532 fastq.gz 1.2 GB
EGAF00007956533 fastq.gz 1.2 GB
EGAF00007956534 fastq.gz 2.1 GB
EGAF00007956535 fastq.gz 2.1 GB
EGAF00007956536 fastq.gz 2.7 GB
EGAF00007956537 fastq.gz 2.7 GB
EGAF00007956538 fastq.gz 2.2 GB
EGAF00007956539 fastq.gz 2.2 GB
EGAF00007956540 fastq.gz 3.1 GB
EGAF00007956541 fastq.gz 3.2 GB
EGAF00007956542 fastq.gz 2.4 GB
EGAF00007956543 fastq.gz 2.5 GB
72 Files (179.9 GB)