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Leukemia WGS data

Whole-genome sequencing data from 38 leukemia patients and 12 leukemia cell lines; Containing 100 fastq files; Two files for each sample.

Request Access

As detailed in the ‘Data Access Agreement’, the terms and conditions govern access to the managed access datasets to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Data Generating Institution or their representative grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Generating Institution: Institution owning the Data released onto the archive. Data Generating Institution Representative: Individual authorized to approve requests to use these data. At present, this individual is jian.xu@utsouthwestern.edu. Data Producers: Jian Xu and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. This refers to the Institution(s) to which the User is affiliated to at the time of the request. User Institution details here: 1. The User Institution agrees to only use the Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at a minimum the measures set out in Appendix I to protect these Data. 3. The User Institution assumes responsibility (and liability) for the protection of the confidentiality of Research Participants in any publications that are prepared by Users. This applies even after the Users have left the Institution. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees to maintain any local copy of these data exclusively on Institutional Desktop computers with the precautions set forth in Appendix I. Under no circumstances will these data be transferred to laptop computers (including institutional computers), or copied onto USB drives (even if encrypted). Only those individuals listed in the agreement will be given access to the Data. The Data will not be shared with other individuals whether Internal or External Collaborators. Under no circumstances will the Data be re-uploaded into another Database or released, even partially. Should the User Institution wish to share these Data with other Collaborators, they must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, expressed or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (https://wellcome.ac.uk/sites/default/files/wtd003207_0.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard any local copies of the Data held, once the Project described in this agreement is completed or 5 years from the date of acquisition, whichever comes first. 12. The User Institution will notify the Data Generating Institution Representative within 30 days of any changes or departures of Authorised Personnel. 13. Any significant changes to the protocol for the Project will require a written authorization from the Data Generating Institution Representative prior to utilizing these data. 14. The User Institution will notify Data Generating Institution Representative as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Data Generating Institution Representative may terminate this agreement by written notice to the User Institution at any time. The User Institution agrees to destroy any data, including copies and backup copies, within 5 business days of this notification. 16. The User Institution accepts responsibility for compliance with any changes to the terms of this agreement set forth by the Data Generating Institution. The User Institution may elect to accept the changes or terminate the agreement. 17. The User Institution agrees to allow data security and management documentation to be inspected by the Data Generating Institution to verify that it is complying with the terms of this agreement. Full legal name and contact information for the IT Director: 18. The User Institution is responsible for distributing a copy of these terms to all Authorised Personnel. The User Institution assumes responsibility for the compliance of Authorised Personnel with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006131232 1647891780119 57.2 GB
EGAF00006131233 1647896580084 56.5 GB
EGAF00006131234 1647895740069 52.9 GB
EGAF00006131235 1647882660240 54.5 GB
EGAF00006131236 1647881640112 42.4 GB
EGAF00006131237 1647884041057 44.6 GB
EGAF00006131238 1647888602312 52.5 GB
EGAF00006131239 1647891960078 53.2 GB
EGAF00006131240 1647884888524 41.1 GB
EGAF00006131241 1647885008179 43.2 GB
EGAF00006131242 1647887100598 37.0 GB
EGAF00006131243 1647879420142 58.7 GB
EGAF00006131244 1647889800365 57.4 GB
EGAF00006131245 1647892800253 57.3 GB
EGAF00006131246 1648016520188 48.6 GB
EGAF00006131247 1647891361119 51.1 GB
EGAF00006131248 1647897540367 59.4 GB
EGAF00006131249 1647895740069 58.1 GB
EGAF00006131250 1647891120167 51.2 GB
EGAF00006131251 1647896820091 48.8 GB
EGAF00006131252 1647896580084 56.8 GB
EGAF00006131253 1647893700203 58.5 GB
EGAF00006131254 1647887040117 55.8 GB
EGAF00006131255 1647889500441 58.1 GB
EGAF00006131256 1647890280708 57.4 GB
EGAF00006131257 1647887280335 56.8 GB
EGAF00006131258 1647885128375 56.1 GB
EGAF00006131259 1647890400777 54.3 GB
EGAF00006131260 1647889560379 57.6 GB
EGAF00006131261 1648019880114 56.7 GB
EGAF00006131262 1648018380164 58.1 GB
EGAF00006131263 1647893220042 56.0 GB
EGAF00006131264 1648020600151 57.7 GB
EGAF00006131265 1647891420084 57.3 GB
EGAF00006131266 1647882780317 57.2 GB
EGAF00006131267 1647896580084 56.6 GB
EGAF00006131268 1647894360201 28.5 GB
EGAF00006131269 1647886261340 28.2 GB
EGAF00006131270 1647893520151 47.6 GB
EGAF00006131271 1647884160295 48.3 GB
EGAF00006131272 1647890340364 56.0 GB
EGAF00006131273 1647890400777 55.5 GB
EGAF00006131274 1647892140127 53.7 GB
EGAF00006131275 1647890820781 52.8 GB
EGAF00006131276 1647894600043 45.7 GB
EGAF00006131277 1647884766270 33.1 GB
EGAF00006131278 1647886920435 55.9 GB
EGAF00006131279 1647897960021 55.4 GB
EGAF00006131280 1647895980106 54.4 GB
EGAF00006131281 1647882420145 57.1 GB
EGAF00006131282 1647891180240 54.8 GB
EGAF00006131283 1647892620129 57.9 GB
EGAF00006131284 1647889920428 55.5 GB
EGAF00006131285 1647892200140 55.1 GB
EGAF00006131286 1647885842765 59.6 GB
EGAF00006131287 1647884340209 59.3 GB
EGAF00006131288 1647894360201 59.9 GB
EGAF00006131289 1647888360467 59.1 GB
EGAF00006131290 1647896700094 59.0 GB
EGAF00006131291 1647886201049 57.1 GB
EGAF00006131292 1647887040117 55.4 GB
EGAF00006131293 1647888300493 58.1 GB
EGAF00006131294 1647888541898 57.8 GB
EGAF00006131295 1647885541259 55.9 GB
EGAF00006131296 1647890520399 54.7 GB
EGAF00006131297 1647892080806 57.8 GB
EGAF00006131298 1647892800253 58.9 GB
EGAF00006131299 1647897780015 57.4 GB
EGAF00006131300 1647882161424 56.8 GB
EGAF00006131301 1647896100176 55.2 GB
EGAF00006131302 1647889260965 48.7 GB
EGAF00006131303 1647895020110 46.3 GB
EGAF00006131304 1647886261340 80.0 GB
EGAF00006131305 1648028280025 87.7 GB
EGAF00006131306 1647894420126 78.1 GB
EGAF00006131307 1647886500510 85.0 GB
EGAF00006131308 1647893820474 55.9 GB
EGAF00006131309 1647886620314 54.5 GB
EGAF00006131310 1647880680183 58.8 GB
EGAF00006131311 1647891600548 57.7 GB
EGAF00006131312 1647892680123 59.3 GB
EGAF00006131313 1647894900067 57.8 GB
EGAF00006131314 1647879060086 22.6 GB
EGAF00006131315 1647882660240 58.6 GB
EGAF00006131316 1647881160145 58.4 GB
EGAF00006131317 1647891180240 56.9 GB
EGAF00006131318 1647880860165 55.1 GB
EGAF00006131319 1647899040122 57.5 GB
EGAF00006131320 1647896340055 54.2 GB
EGAF00006131321 1647891000251 54.4 GB
EGAF00006131322 1647891660166 56.0 GB
EGAF00006131323 1647897300049 55.3 GB
EGAF00006131324 1648022883099 57.8 GB
EGAF00006131325 1647892440480 56.2 GB
EGAF00006131326 1647881040160 58.5 GB
EGAF00006131327 1647899040122 56.7 GB
EGAF00006131328 1647896700094 57.8 GB
EGAF00006131329 1647893340128 57.7 GB
EGAF00006131330 1647894420126 61.1 GB
EGAF00006131331 1647886860377 59.3 GB
100 Files (5.5 TB)