Metagenomic sequences from human stool samples
DNA extraction from human stool samples was performed at the Center for Microbiome Innovation (CMI) at University of California, San Diego. DNA sequencing libraries were prepared using Nextera XT (Illumina). Shotgun DNA sequencing was performed on the Illumina HiSeq4000 platform. Raw fastq reads were quality-checked. Skewer (version 0.2.2) was utilized with the paired-end mode. Human reads were identified and removed by Bowtie2 mapping against the human genome reference (hg19), followed by bam2fastq with --unaligned --no-aligned --force options.
- 09/11/2020
- 162 samples
- DAC: EGAC00001001691
NAFLD Research Center Data Access Policy
Any user accessing data from the UCSD NAFLD Research Center must adhere to its Data Access Policy, which indicates that investigators who download from the European Genome-phenome Archive (EGA) repository should: • Not attempt to identify individual human research participants from whom the data were obtained. • Acknowledge in all oral or written presentations, disclosures, or publications the specific dataset(s) or applicable accession number(s) and the EGA data repositories through which the investigator accessed any data.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00004457306 | fastq.gz | 104.9 MB | ||
| EGAF00004457307 | fastq.gz | 114.6 MB | ||
| EGAF00004457308 | fastq.gz | 93.9 MB | ||
| EGAF00004457309 | fastq.gz | 103.7 MB | ||
| EGAF00004457310 | fastq.gz | 112.0 MB | ||
| EGAF00004457311 | fastq.gz | 124.7 MB | ||
| EGAF00004457312 | fastq.gz | 133.0 MB | ||
| EGAF00004457313 | fastq.gz | 146.1 MB | ||
| EGAF00004457314 | fastq.gz | 58.4 MB | ||
| EGAF00004457315 | fastq.gz | 64.1 MB | ||
| EGAF00004457316 | fastq.gz | 67.6 MB | ||
| EGAF00004457317 | fastq.gz | 73.7 MB | ||
| EGAF00004457318 | fastq.gz | 231.4 MB | ||
| EGAF00004457319 | fastq.gz | 254.9 MB | ||
| EGAF00004457320 | fastq.gz | 290.0 MB | ||
| EGAF00004457321 | fastq.gz | 319.7 MB | ||
| EGAF00004457322 | fastq.gz | 176.7 MB | ||
| EGAF00004457323 | fastq.gz | 195.1 MB | ||
| EGAF00004457324 | fastq.gz | 93.6 MB | ||
| EGAF00004457325 | fastq.gz | 102.3 MB | ||
| EGAF00004457326 | fastq.gz | 140.2 MB | ||
| EGAF00004457327 | fastq.gz | 153.5 MB | ||
| EGAF00004457328 | fastq.gz | 102.1 MB | ||
| EGAF00004457329 | fastq.gz | 113.3 MB | ||
| EGAF00004457330 | fastq.gz | 63.1 MB | ||
| EGAF00004457331 | fastq.gz | 69.2 MB | ||
| EGAF00004457332 | fastq.gz | 72.5 MB | ||
| EGAF00004457333 | fastq.gz | 80.0 MB | ||
| EGAF00004457334 | fastq.gz | 99.4 MB | ||
| EGAF00004457335 | fastq.gz | 106.7 MB | ||
| EGAF00004457336 | fastq.gz | 119.3 MB | ||
| EGAF00004457337 | fastq.gz | 130.7 MB | ||
| EGAF00004457338 | fastq.gz | 236.9 MB | ||
| EGAF00004457339 | fastq.gz | 263.5 MB | ||
| EGAF00004457340 | fastq.gz | 268.6 MB | ||
| EGAF00004457341 | fastq.gz | 295.1 MB | ||
| EGAF00004457342 | fastq.gz | 115.4 MB | ||
| EGAF00004457343 | fastq.gz | 126.5 MB | ||
| EGAF00004457344 | fastq.gz | 56.2 MB | ||
| EGAF00004457345 | fastq.gz | 61.8 MB | ||
| EGAF00004457346 | fastq.gz | 111.9 MB | ||
| EGAF00004457347 | fastq.gz | 124.7 MB | ||
| EGAF00004457348 | fastq.gz | 112.7 MB | ||
| EGAF00004457349 | fastq.gz | 123.6 MB | ||
| EGAF00004457350 | fastq.gz | 78.4 MB | ||
| EGAF00004457351 | fastq.gz | 85.9 MB | ||
| EGAF00004457352 | fastq.gz | 54.0 MB | ||
| EGAF00004457353 | fastq.gz | 58.6 MB | ||
| EGAF00004457354 | fastq.gz | 61.9 MB | ||
| EGAF00004457355 | fastq.gz | 67.9 MB | ||
| EGAF00004457356 | fastq.gz | 117.1 MB | ||
| EGAF00004457357 | fastq.gz | 129.2 MB | ||
| EGAF00004457358 | fastq.gz | 91.4 MB | ||
| EGAF00004457359 | fastq.gz | 101.0 MB | ||
| EGAF00004457360 | fastq.gz | 192.7 MB | ||
| EGAF00004457361 | fastq.gz | 209.6 MB | ||
| EGAF00004457362 | fastq.gz | 550.1 MB | ||
| EGAF00004457363 | fastq.gz | 605.8 MB | ||
| EGAF00004457364 | fastq.gz | 73.6 MB | ||
| EGAF00004457365 | fastq.gz | 80.9 MB | ||
| EGAF00004457366 | fastq.gz | 130.0 MB | ||
| EGAF00004457367 | fastq.gz | 142.3 MB | ||
| EGAF00004457368 | fastq.gz | 71.1 MB | ||
| EGAF00004457369 | fastq.gz | 78.0 MB | ||
| EGAF00004457370 | fastq.gz | 149.8 MB | ||
| EGAF00004457371 | fastq.gz | 163.5 MB | ||
| EGAF00004457372 | fastq.gz | 73.5 MB | ||
| EGAF00004457373 | fastq.gz | 80.0 MB | ||
| EGAF00004457374 | fastq.gz | 79.9 MB | ||
| EGAF00004457375 | fastq.gz | 87.5 MB | ||
| EGAF00004457376 | fastq.gz | 131.2 MB | ||
| EGAF00004457377 | fastq.gz | 143.8 MB | ||
| EGAF00004457378 | fastq.gz | 190.6 MB | ||
| EGAF00004457379 | fastq.gz | 212.2 MB | ||
| EGAF00004457380 | fastq.gz | 195.2 MB | ||
| EGAF00004457381 | fastq.gz | 215.3 MB | ||
| EGAF00004457382 | fastq.gz | 90.3 MB | ||
| EGAF00004457383 | fastq.gz | 99.6 MB | ||
| EGAF00004457384 | fastq.gz | 106.1 MB | ||
| EGAF00004457385 | fastq.gz | 116.6 MB | ||
| EGAF00004457386 | fastq.gz | 115.7 MB | ||
| EGAF00004457387 | fastq.gz | 127.2 MB | ||
| EGAF00004457388 | fastq.gz | 156.4 MB | ||
| EGAF00004457389 | fastq.gz | 172.8 MB | ||
| EGAF00004457390 | fastq.gz | 120.5 MB | ||
| EGAF00004457391 | fastq.gz | 132.1 MB | ||
| EGAF00004457392 | fastq.gz | 134.3 MB | ||
| EGAF00004457393 | fastq.gz | 146.4 MB | ||
| EGAF00004457394 | fastq.gz | 186.2 MB | ||
| EGAF00004457395 | fastq.gz | 204.7 MB | ||
| EGAF00004457396 | fastq.gz | 125.9 MB | ||
| EGAF00004457397 | fastq.gz | 137.4 MB | ||
| EGAF00004457398 | fastq.gz | 115.8 MB | ||
| EGAF00004457399 | fastq.gz | 126.0 MB | ||
| EGAF00004457400 | fastq.gz | 82.0 MB | ||
| EGAF00004457401 | fastq.gz | 89.7 MB | ||
| EGAF00004457402 | fastq.gz | 208.4 MB | ||
| EGAF00004457403 | fastq.gz | 228.0 MB | ||
| EGAF00004457404 | fastq.gz | 276.1 MB | ||
| EGAF00004457405 | fastq.gz | 302.9 MB | ||
| EGAF00004457406 | fastq.gz | 97.4 MB | ||
| EGAF00004457407 | fastq.gz | 106.8 MB | ||
| EGAF00004457408 | fastq.gz | 125.0 MB | ||
| EGAF00004457409 | fastq.gz | 137.1 MB | ||
| EGAF00004457410 | fastq.gz | 59.8 MB | ||
| EGAF00004457411 | fastq.gz | 63.9 MB | ||
| EGAF00004457412 | fastq.gz | 109.2 MB | ||
| EGAF00004457413 | fastq.gz | 119.6 MB | ||
| EGAF00004457414 | fastq.gz | 78.9 MB | ||
| EGAF00004457415 | fastq.gz | 87.0 MB | ||
| EGAF00004457416 | fastq.gz | 120.5 MB | ||
| EGAF00004457417 | fastq.gz | 131.7 MB | ||
| EGAF00004457418 | fastq.gz | 158.6 MB | ||
| EGAF00004457419 | fastq.gz | 174.6 MB | ||
| EGAF00004457420 | fastq.gz | 72.6 MB | ||
| EGAF00004457421 | fastq.gz | 79.2 MB | ||
| EGAF00004457422 | fastq.gz | 64.0 MB | ||
| EGAF00004457423 | fastq.gz | 70.7 MB | ||
| EGAF00004457424 | fastq.gz | 61.2 MB | ||
| EGAF00004457425 | fastq.gz | 66.9 MB | ||
| EGAF00004457426 | fastq.gz | 122.4 MB | ||
| EGAF00004457427 | fastq.gz | 135.2 MB | ||
| EGAF00004457428 | fastq.gz | 119.0 MB | ||
| EGAF00004457429 | fastq.gz | 131.2 MB | ||
| EGAF00004457430 | fastq.gz | 114.0 MB | ||
| EGAF00004457431 | fastq.gz | 125.7 MB | ||
| EGAF00004457432 | fastq.gz | 124.1 MB | ||
| EGAF00004457433 | fastq.gz | 136.7 MB | ||
| EGAF00004457434 | fastq.gz | 183.6 MB | ||
| EGAF00004457435 | fastq.gz | 201.1 MB | ||
| EGAF00004457436 | fastq.gz | 180.7 MB | ||
| EGAF00004457437 | fastq.gz | 198.7 MB | ||
| EGAF00004457438 | fastq.gz | 195.5 MB | ||
| EGAF00004457439 | fastq.gz | 214.3 MB | ||
| EGAF00004457440 | fastq.gz | 252.0 MB | ||
| EGAF00004457441 | fastq.gz | 274.9 MB | ||
| EGAF00004457442 | fastq.gz | 129.2 MB | ||
| EGAF00004457443 | fastq.gz | 142.0 MB | ||
| EGAF00004457444 | fastq.gz | 103.5 MB | ||
| EGAF00004457445 | fastq.gz | 115.9 MB | ||
| EGAF00004457446 | fastq.gz | 129.0 MB | ||
| EGAF00004457447 | fastq.gz | 133.7 MB | ||
| EGAF00004457448 | fastq.gz | 66.7 MB | ||
| EGAF00004457449 | fastq.gz | 73.8 MB | ||
| EGAF00004457450 | fastq.gz | 91.3 MB | ||
| EGAF00004457451 | fastq.gz | 100.7 MB | ||
| EGAF00004457452 | fastq.gz | 62.4 MB | ||
| EGAF00004457453 | fastq.gz | 69.3 MB | ||
| EGAF00004457454 | fastq.gz | 106.1 MB | ||
| EGAF00004457455 | fastq.gz | 116.8 MB | ||
| EGAF00004457456 | fastq.gz | 68.9 MB | ||
| EGAF00004457457 | fastq.gz | 76.0 MB | ||
| EGAF00004457458 | fastq.gz | 300.6 MB | ||
| EGAF00004457459 | fastq.gz | 322.8 MB | ||
| EGAF00004457460 | fastq.gz | 219.1 MB | ||
| EGAF00004457461 | fastq.gz | 238.9 MB | ||
| EGAF00004457462 | fastq.gz | 143.7 MB | ||
| EGAF00004457463 | fastq.gz | 148.1 MB | ||
| EGAF00004457464 | fastq.gz | 87.8 MB | ||
| EGAF00004457465 | fastq.gz | 96.5 MB | ||
| EGAF00004457466 | fastq.gz | 345.4 MB | ||
| EGAF00004457467 | fastq.gz | 383.5 MB | ||
| EGAF00004457468 | fastq.gz | 119.9 MB | ||
| EGAF00004457469 | fastq.gz | 131.1 MB | ||
| EGAF00004457470 | fastq.gz | 87.0 MB | ||
| EGAF00004457471 | fastq.gz | 96.5 MB | ||
| EGAF00004457472 | fastq.gz | 120.1 MB | ||
| EGAF00004457473 | fastq.gz | 131.9 MB | ||
| EGAF00004457474 | fastq.gz | 214.7 MB | ||
| EGAF00004457475 | fastq.gz | 234.8 MB | ||
| EGAF00004457476 | fastq.gz | 225.9 MB | ||
| EGAF00004457477 | fastq.gz | 246.0 MB | ||
| EGAF00004457478 | fastq.gz | 93.5 MB | ||
| EGAF00004457479 | fastq.gz | 103.3 MB | ||
| EGAF00004457480 | fastq.gz | 79.7 MB | ||
| EGAF00004457481 | fastq.gz | 87.3 MB | ||
| EGAF00004457482 | fastq.gz | 107.8 MB | ||
| EGAF00004457483 | fastq.gz | 117.7 MB | ||
| EGAF00004457484 | fastq.gz | 60.7 MB | ||
| EGAF00004457485 | fastq.gz | 66.2 MB | ||
| EGAF00004457486 | fastq.gz | 546.2 MB | ||
| EGAF00004457487 | fastq.gz | 602.0 MB | ||
| EGAF00004457488 | fastq.gz | 155.0 MB | ||
| EGAF00004457489 | fastq.gz | 171.5 MB | ||
| EGAF00004457490 | fastq.gz | 238.7 MB | ||
| EGAF00004457491 | fastq.gz | 263.0 MB | ||
| EGAF00004457492 | fastq.gz | 137.7 MB | ||
| EGAF00004457493 | fastq.gz | 149.7 MB | ||
| EGAF00004457494 | fastq.gz | 204.0 MB | ||
| EGAF00004457495 | fastq.gz | 223.0 MB | ||
| EGAF00004457496 | fastq.gz | 143.8 MB | ||
| EGAF00004457497 | fastq.gz | 157.2 MB | ||
| EGAF00004457498 | fastq.gz | 126.3 MB | ||
| EGAF00004457499 | fastq.gz | 138.8 MB | ||
| EGAF00004457500 | fastq.gz | 334.1 MB | ||
| EGAF00004457501 | fastq.gz | 350.8 MB | ||
| EGAF00004457502 | fastq.gz | 137.5 MB | ||
| EGAF00004457503 | fastq.gz | 152.6 MB | ||
| EGAF00004457504 | fastq.gz | 272.2 MB | ||
| EGAF00004457505 | fastq.gz | 300.0 MB | ||
| EGAF00004457506 | fastq.gz | 192.7 MB | ||
| EGAF00004457507 | fastq.gz | 190.0 MB | ||
| EGAF00004457508 | fastq.gz | 149.4 MB | ||
| EGAF00004457509 | fastq.gz | 163.4 MB | ||
| EGAF00004457510 | fastq.gz | 209.1 MB | ||
| EGAF00004457511 | fastq.gz | 230.7 MB | ||
| EGAF00004457512 | fastq.gz | 280.6 MB | ||
| EGAF00004457513 | fastq.gz | 312.3 MB | ||
| EGAF00004457514 | fastq.gz | 227.0 MB | ||
| EGAF00004457515 | fastq.gz | 246.3 MB | ||
| EGAF00004457516 | fastq.gz | 123.3 MB | ||
| EGAF00004457517 | fastq.gz | 135.9 MB | ||
| EGAF00004457518 | fastq.gz | 215.7 MB | ||
| EGAF00004457519 | fastq.gz | 238.8 MB | ||
| EGAF00004457520 | fastq.gz | 9.2 MB | ||
| EGAF00004457521 | fastq.gz | 10.1 MB | ||
| EGAF00004457522 | fastq.gz | 259.1 MB | ||
| EGAF00004457523 | fastq.gz | 285.1 MB | ||
| EGAF00004457524 | fastq.gz | 152.9 MB | ||
| EGAF00004457525 | fastq.gz | 168.8 MB | ||
| EGAF00004457526 | fastq.gz | 149.0 MB | ||
| EGAF00004457527 | fastq.gz | 164.2 MB | ||
| EGAF00004457528 | fastq.gz | 138.1 MB | ||
| EGAF00004457529 | fastq.gz | 153.1 MB | ||
| EGAF00004457530 | fastq.gz | 413.6 MB | ||
| EGAF00004457531 | fastq.gz | 457.8 MB | ||
| EGAF00004457532 | fastq.gz | 98.3 MB | ||
| EGAF00004457533 | fastq.gz | 107.1 MB | ||
| EGAF00004457534 | fastq.gz | 187.6 MB | ||
| EGAF00004457535 | fastq.gz | 205.7 MB | ||
| EGAF00004457536 | fastq.gz | 151.8 MB | ||
| EGAF00004457537 | fastq.gz | 166.5 MB | ||
| EGAF00004457538 | fastq.gz | 64.3 MB | ||
| EGAF00004457539 | fastq.gz | 70.9 MB | ||
| EGAF00004457540 | fastq.gz | 62.1 MB | ||
| EGAF00004457541 | fastq.gz | 68.5 MB | ||
| EGAF00004457542 | fastq.gz | 76.3 MB | ||
| EGAF00004457543 | fastq.gz | 84.1 MB | ||
| EGAF00004457544 | fastq.gz | 144.7 MB | ||
| EGAF00004457545 | fastq.gz | 159.0 MB | ||
| EGAF00004457546 | fastq.gz | 111.6 MB | ||
| EGAF00004457547 | fastq.gz | 122.8 MB | ||
| EGAF00004457548 | fastq.gz | 85.6 MB | ||
| EGAF00004457549 | fastq.gz | 95.1 MB | ||
| EGAF00004457550 | fastq.gz | 198.3 MB | ||
| EGAF00004457551 | fastq.gz | 220.2 MB | ||
| EGAF00004457552 | fastq.gz | 519.6 MB | ||
| EGAF00004457553 | fastq.gz | 569.7 MB | ||
| EGAF00004457554 | fastq.gz | 103.1 MB | ||
| EGAF00004457555 | fastq.gz | 113.5 MB | ||
| EGAF00004457556 | fastq.gz | 178.1 MB | ||
| EGAF00004457557 | fastq.gz | 187.3 MB | ||
| EGAF00004457558 | fastq.gz | 242.2 MB | ||
| EGAF00004457559 | fastq.gz | 269.9 MB | ||
| EGAF00004457560 | fastq.gz | 79.2 MB | ||
| EGAF00004457561 | fastq.gz | 83.9 MB | ||
| EGAF00004457562 | fastq.gz | 168.5 MB | ||
| EGAF00004457563 | fastq.gz | 187.4 MB | ||
| EGAF00004457564 | fastq.gz | 82.5 MB | ||
| EGAF00004457565 | fastq.gz | 90.7 MB | ||
| EGAF00004457566 | fastq.gz | 51.6 MB | ||
| EGAF00004457567 | fastq.gz | 57.3 MB | ||
| EGAF00004457568 | fastq.gz | 166.5 MB | ||
| EGAF00004457569 | fastq.gz | 182.5 MB | ||
| EGAF00004457570 | fastq.gz | 350.1 MB | ||
| EGAF00004457571 | fastq.gz | 386.9 MB | ||
| EGAF00004457572 | fastq.gz | 136.5 MB | ||
| EGAF00004457573 | fastq.gz | 150.7 MB | ||
| EGAF00004457574 | fastq.gz | 106.5 MB | ||
| EGAF00004457575 | fastq.gz | 116.5 MB | ||
| EGAF00004457576 | fastq.gz | 105.8 MB | ||
| EGAF00004457577 | fastq.gz | 117.4 MB | ||
| EGAF00004457578 | fastq.gz | 93.7 MB | ||
| EGAF00004457579 | fastq.gz | 103.0 MB | ||
| EGAF00004457580 | fastq.gz | 104.6 MB | ||
| EGAF00004457581 | fastq.gz | 116.0 MB | ||
| EGAF00004457582 | fastq.gz | 142.1 MB | ||
| EGAF00004457583 | fastq.gz | 157.4 MB | ||
| EGAF00004457584 | fastq.gz | 121.8 MB | ||
| EGAF00004457585 | fastq.gz | 133.5 MB | ||
| EGAF00004457586 | fastq.gz | 153.5 MB | ||
| EGAF00004457587 | fastq.gz | 170.9 MB | ||
| EGAF00004457588 | fastq.gz | 120.9 MB | ||
| EGAF00004457589 | fastq.gz | 133.8 MB | ||
| EGAF00004457590 | fastq.gz | 35.7 MB | ||
| EGAF00004457591 | fastq.gz | 39.7 MB | ||
| EGAF00004457592 | fastq.gz | 74.1 MB | ||
| EGAF00004457593 | fastq.gz | 81.0 MB | ||
| EGAF00004457594 | fastq.gz | 70.5 MB | ||
| EGAF00004457595 | fastq.gz | 77.5 MB | ||
| EGAF00004457596 | fastq.gz | 196.5 MB | ||
| EGAF00004457597 | fastq.gz | 216.2 MB | ||
| EGAF00004457598 | fastq.gz | 137.5 MB | ||
| EGAF00004457599 | fastq.gz | 153.3 MB | ||
| EGAF00004457600 | fastq.gz | 70.0 MB | ||
| EGAF00004457601 | fastq.gz | 77.0 MB | ||
| EGAF00004457602 | fastq.gz | 89.1 MB | ||
| EGAF00004457603 | fastq.gz | 98.0 MB | ||
| EGAF00004457604 | fastq.gz | 94.8 MB | ||
| EGAF00004457605 | fastq.gz | 105.9 MB | ||
| EGAF00004457606 | fastq.gz | 63.4 MB | ||
| EGAF00004457607 | fastq.gz | 69.4 MB | ||
| EGAF00004457608 | fastq.gz | 194.5 MB | ||
| EGAF00004457609 | fastq.gz | 213.5 MB | ||
| EGAF00004457610 | fastq.gz | 56.2 MB | ||
| EGAF00004457611 | fastq.gz | 61.6 MB | ||
| EGAF00004457612 | fastq.gz | 95.1 MB | ||
| EGAF00004457613 | fastq.gz | 104.4 MB | ||
| EGAF00004457614 | fastq.gz | 149.0 MB | ||
| EGAF00004457615 | fastq.gz | 165.0 MB | ||
| EGAF00004457616 | fastq.gz | 58.8 MB | ||
| EGAF00004457617 | fastq.gz | 61.6 MB | ||
| EGAF00004457618 | fastq.gz | 65.0 MB | ||
| EGAF00004457619 | fastq.gz | 71.5 MB | ||
| EGAF00004457620 | fastq.gz | 80.4 MB | ||
| EGAF00004457621 | fastq.gz | 89.5 MB | ||
| EGAF00004457622 | fastq.gz | 205.4 MB | ||
| EGAF00004457623 | fastq.gz | 226.4 MB | ||
| EGAF00004457624 | fastq.gz | 92.0 MB | ||
| EGAF00004457625 | fastq.gz | 100.5 MB | ||
| EGAF00004457626 | fastq.gz | 88.5 MB | ||
| EGAF00004457627 | fastq.gz | 96.6 MB | ||
| EGAF00004457628 | fastq.gz | 85.2 MB | ||
| EGAF00004457629 | fastq.gz | 83.6 MB | ||
| 324 Files (48.3 GB) | ||||