EFFORT occupationally exposed human stool metagenomes (148 samples)
Metagenomes of stool samples from 54 pig farmers, 24 broiler farmers and 70 slaughter line workers. Note: Access to the data will only be granted for antibiotic resistance studies in accordance with the EFFORT consents issued by the participants.
- 148 samples
- DAC: EGAC00001001343
- Technology: Illumina HiSeq 4000
Access to the data is restricted to antibiotic resistance research.
Data can only be used for research on antibiotic resistance, cannot be used for commercial purposes. Before access to the data is granted, a data access agreement needs to be signed with Utrecht University in which the terms for usage, storage and destruction of the data are described: https://survey.uu.nl/jfe/form/SV_8IVD1kndpZDhcMt. In all cases, also, appropriate references should be made to the original data / description of the data in “Van Gompel et al., 2020, Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: a metagenome-wide cross-sectional study, Environment International, 143, 105393. doi: https://doi.org/10.1016/j.envint.2020.105939.”
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003944 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002830467 | fastq.gz | 3.7 GB | ||
| EGAF00002830468 | fastq.gz | 4.5 GB | ||
| EGAF00002830545 | fastq.gz | 3.6 GB | ||
| EGAF00002830546 | fastq.gz | 4.3 GB | ||
| EGAF00002830549 | fastq.gz | 3.7 GB | ||
| EGAF00002830550 | fastq.gz | 4.6 GB | ||
| EGAF00002830555 | fastq.gz | 3.8 GB | ||
| EGAF00002830556 | fastq.gz | 4.6 GB | ||
| EGAF00002830559 | fastq.gz | 3.6 GB | ||
| EGAF00002830560 | fastq.gz | 4.4 GB | ||
| EGAF00002830563 | fastq.gz | 3.7 GB | ||
| EGAF00002830564 | fastq.gz | 4.6 GB | ||
| EGAF00002830567 | fastq.gz | 3.7 GB | ||
| EGAF00002830568 | fastq.gz | 4.4 GB | ||
| EGAF00002830569 | fastq.gz | 4.2 GB | ||
| EGAF00002830570 | fastq.gz | 4.9 GB | ||
| EGAF00002830573 | fastq.gz | 3.8 GB | ||
| EGAF00002830574 | fastq.gz | 4.7 GB | ||
| EGAF00002830575 | fastq.gz | 5.4 GB | ||
| EGAF00002830576 | fastq.gz | 6.7 GB | ||
| EGAF00002830577 | fastq.gz | 3.8 GB | ||
| EGAF00002830578 | fastq.gz | 4.7 GB | ||
| EGAF00002830579 | fastq.gz | 3.8 GB | ||
| EGAF00002830580 | fastq.gz | 4.6 GB | ||
| EGAF00002830581 | fastq.gz | 3.7 GB | ||
| EGAF00002830582 | fastq.gz | 4.5 GB | ||
| EGAF00002830583 | fastq.gz | 4.5 GB | ||
| EGAF00002830584 | fastq.gz | 5.3 GB | ||
| EGAF00002830585 | fastq.gz | 3.5 GB | ||
| EGAF00002830586 | fastq.gz | 4.3 GB | ||
| EGAF00002830587 | fastq.gz | 3.6 GB | ||
| EGAF00002830588 | fastq.gz | 4.5 GB | ||
| EGAF00002830589 | fastq.gz | 3.9 GB | ||
| EGAF00002830590 | fastq.gz | 4.7 GB | ||
| EGAF00002830591 | fastq.gz | 3.6 GB | ||
| EGAF00002830592 | fastq.gz | 4.5 GB | ||
| EGAF00002830593 | fastq.gz | 4.2 GB | ||
| EGAF00002830594 | fastq.gz | 5.2 GB | ||
| EGAF00002830595 | fastq.gz | 4.0 GB | ||
| EGAF00002830596 | fastq.gz | 5.1 GB | ||
| EGAF00002830597 | fastq.gz | 3.6 GB | ||
| EGAF00002830598 | fastq.gz | 4.3 GB | ||
| EGAF00002830599 | fastq.gz | 3.8 GB | ||
| EGAF00002830600 | fastq.gz | 4.8 GB | ||
| EGAF00002830601 | fastq.gz | 3.7 GB | ||
| EGAF00002830602 | fastq.gz | 4.3 GB | ||
| EGAF00002830603 | fastq.gz | 3.5 GB | ||
| EGAF00002830604 | fastq.gz | 4.2 GB | ||
| EGAF00002830605 | fastq.gz | 4.3 GB | ||
| EGAF00002830606 | fastq.gz | 5.3 GB | ||
| EGAF00002830607 | fastq.gz | 4.0 GB | ||
| EGAF00002830608 | fastq.gz | 4.8 GB | ||
| EGAF00002830609 | fastq.gz | 3.7 GB | ||
| EGAF00002830610 | fastq.gz | 4.5 GB | ||
| EGAF00002830611 | fastq.gz | 3.6 GB | ||
| EGAF00002830612 | fastq.gz | 4.4 GB | ||
| EGAF00002830613 | fastq.gz | 3.7 GB | ||
| EGAF00002830614 | fastq.gz | 4.5 GB | ||
| EGAF00002830615 | fastq.gz | 3.5 GB | ||
| EGAF00002830616 | fastq.gz | 4.3 GB | ||
| EGAF00002830617 | fastq.gz | 4.3 GB | ||
| EGAF00002830618 | fastq.gz | 5.2 GB | ||
| EGAF00002830619 | fastq.gz | 3.6 GB | ||
| EGAF00002830620 | fastq.gz | 4.4 GB | ||
| EGAF00002830621 | fastq.gz | 3.8 GB | ||
| EGAF00002830622 | fastq.gz | 4.6 GB | ||
| EGAF00002830623 | fastq.gz | 4.0 GB | ||
| EGAF00002830624 | fastq.gz | 4.8 GB | ||
| EGAF00002830625 | fastq.gz | 3.5 GB | ||
| EGAF00002830626 | fastq.gz | 4.3 GB | ||
| EGAF00002830627 | fastq.gz | 3.8 GB | ||
| EGAF00002830628 | fastq.gz | 4.8 GB | ||
| EGAF00002830629 | fastq.gz | 4.3 GB | ||
| EGAF00002830630 | fastq.gz | 5.3 GB | ||
| EGAF00002830631 | fastq.gz | 3.1 GB | ||
| EGAF00002830632 | fastq.gz | 3.8 GB | ||
| EGAF00002830633 | fastq.gz | 3.6 GB | ||
| EGAF00002830634 | fastq.gz | 4.4 GB | ||
| EGAF00002830635 | fastq.gz | 3.6 GB | ||
| EGAF00002830636 | fastq.gz | 4.5 GB | ||
| EGAF00002830637 | fastq.gz | 3.5 GB | ||
| EGAF00002830638 | fastq.gz | 4.4 GB | ||
| EGAF00002830639 | fastq.gz | 3.7 GB | ||
| EGAF00002830640 | fastq.gz | 4.6 GB | ||
| EGAF00002830641 | fastq.gz | 4.5 GB | ||
| EGAF00002830642 | fastq.gz | 5.6 GB | ||
| EGAF00002830643 | fastq.gz | 3.5 GB | ||
| EGAF00002830644 | fastq.gz | 4.3 GB | ||
| EGAF00002830645 | fastq.gz | 3.7 GB | ||
| EGAF00002830646 | fastq.gz | 4.7 GB | ||
| EGAF00002830647 | fastq.gz | 3.7 GB | ||
| EGAF00002830648 | fastq.gz | 4.5 GB | ||
| EGAF00002830649 | fastq.gz | 4.4 GB | ||
| EGAF00002830650 | fastq.gz | 5.5 GB | ||
| EGAF00002830651 | fastq.gz | 4.7 GB | ||
| EGAF00002830652 | fastq.gz | 5.8 GB | ||
| EGAF00002830653 | fastq.gz | 4.4 GB | ||
| EGAF00002830654 | fastq.gz | 5.4 GB | ||
| EGAF00002830655 | fastq.gz | 3.6 GB | ||
| EGAF00002830656 | fastq.gz | 4.4 GB | ||
| EGAF00002830657 | fastq.gz | 3.7 GB | ||
| EGAF00002830658 | fastq.gz | 4.5 GB | ||
| EGAF00002830659 | fastq.gz | 3.7 GB | ||
| EGAF00002830660 | fastq.gz | 4.6 GB | ||
| EGAF00002830661 | fastq.gz | 3.6 GB | ||
| EGAF00002830662 | fastq.gz | 4.4 GB | ||
| EGAF00002830663 | fastq.gz | 4.2 GB | ||
| EGAF00002830664 | fastq.gz | 5.1 GB | ||
| EGAF00002830665 | fastq.gz | 3.8 GB | ||
| EGAF00002830666 | fastq.gz | 4.5 GB | ||
| EGAF00002830667 | fastq.gz | 4.7 GB | ||
| EGAF00002830668 | fastq.gz | 5.8 GB | ||
| EGAF00002830669 | fastq.gz | 3.6 GB | ||
| EGAF00002830670 | fastq.gz | 4.5 GB | ||
| EGAF00002830671 | fastq.gz | 3.8 GB | ||
| EGAF00002830672 | fastq.gz | 4.8 GB | ||
| EGAF00002830673 | fastq.gz | 4.8 GB | ||
| EGAF00002830674 | fastq.gz | 5.4 GB | ||
| EGAF00002830675 | fastq.gz | 4.2 GB | ||
| EGAF00002830676 | fastq.gz | 5.3 GB | ||
| EGAF00002830677 | fastq.gz | 4.5 GB | ||
| EGAF00002830678 | fastq.gz | 5.6 GB | ||
| EGAF00002830679 | fastq.gz | 3.6 GB | ||
| EGAF00002830680 | fastq.gz | 4.3 GB | ||
| EGAF00002830681 | fastq.gz | 4.5 GB | ||
| EGAF00002830682 | fastq.gz | 5.5 GB | ||
| EGAF00002830683 | fastq.gz | 3.6 GB | ||
| EGAF00002830684 | fastq.gz | 4.4 GB | ||
| EGAF00002830685 | fastq.gz | 3.8 GB | ||
| EGAF00002830686 | fastq.gz | 4.6 GB | ||
| EGAF00002830687 | fastq.gz | 3.8 GB | ||
| EGAF00002830688 | fastq.gz | 4.7 GB | ||
| EGAF00002830689 | fastq.gz | 3.7 GB | ||
| EGAF00002830690 | fastq.gz | 4.6 GB | ||
| EGAF00002830691 | fastq.gz | 3.7 GB | ||
| EGAF00002830692 | fastq.gz | 4.5 GB | ||
| EGAF00002830693 | fastq.gz | 3.9 GB | ||
| EGAF00002830694 | fastq.gz | 4.8 GB | ||
| EGAF00002830695 | fastq.gz | 3.6 GB | ||
| EGAF00002830696 | fastq.gz | 4.3 GB | ||
| EGAF00002830697 | fastq.gz | 3.8 GB | ||
| EGAF00002830698 | fastq.gz | 4.5 GB | ||
| EGAF00002830699 | fastq.gz | 4.1 GB | ||
| EGAF00002830700 | fastq.gz | 4.0 GB | ||
| EGAF00002830701 | fastq.gz | 3.5 GB | ||
| EGAF00002830702 | fastq.gz | 4.4 GB | ||
| EGAF00002830703 | fastq.gz | 3.9 GB | ||
| EGAF00002830704 | fastq.gz | 4.7 GB | ||
| EGAF00002830705 | fastq.gz | 3.8 GB | ||
| EGAF00002830706 | fastq.gz | 4.7 GB | ||
| EGAF00002830707 | fastq.gz | 3.7 GB | ||
| EGAF00002830708 | fastq.gz | 4.6 GB | ||
| EGAF00002830709 | fastq.gz | 3.8 GB | ||
| EGAF00002830710 | fastq.gz | 4.7 GB | ||
| EGAF00002830711 | fastq.gz | 3.9 GB | ||
| EGAF00002830712 | fastq.gz | 4.8 GB | ||
| EGAF00002830713 | fastq.gz | 4.0 GB | ||
| EGAF00002830714 | fastq.gz | 4.9 GB | ||
| EGAF00002830715 | fastq.gz | 3.7 GB | ||
| EGAF00002830716 | fastq.gz | 4.5 GB | ||
| EGAF00002830717 | fastq.gz | 4.0 GB | ||
| EGAF00002830718 | fastq.gz | 4.9 GB | ||
| EGAF00002830719 | fastq.gz | 4.5 GB | ||
| EGAF00002830720 | fastq.gz | 5.4 GB | ||
| EGAF00002830721 | fastq.gz | 3.9 GB | ||
| EGAF00002830722 | fastq.gz | 4.8 GB | ||
| EGAF00002830723 | fastq.gz | 3.8 GB | ||
| EGAF00002830724 | fastq.gz | 4.6 GB | ||
| EGAF00002830725 | fastq.gz | 3.7 GB | ||
| EGAF00002830726 | fastq.gz | 4.5 GB | ||
| EGAF00002830727 | fastq.gz | 3.7 GB | ||
| EGAF00002830728 | fastq.gz | 4.6 GB | ||
| EGAF00002830729 | fastq.gz | 3.7 GB | ||
| EGAF00002830730 | fastq.gz | 4.5 GB | ||
| EGAF00002830731 | fastq.gz | 3.6 GB | ||
| EGAF00002830732 | fastq.gz | 4.4 GB | ||
| EGAF00002830733 | fastq.gz | 3.8 GB | ||
| EGAF00002830734 | fastq.gz | 4.6 GB | ||
| EGAF00002830735 | fastq.gz | 4.5 GB | ||
| EGAF00002830736 | fastq.gz | 5.5 GB | ||
| EGAF00002830737 | fastq.gz | 3.8 GB | ||
| EGAF00002830738 | fastq.gz | 4.6 GB | ||
| EGAF00002830739 | fastq.gz | 3.8 GB | ||
| EGAF00002830740 | fastq.gz | 4.7 GB | ||
| EGAF00002830741 | fastq.gz | 3.5 GB | ||
| EGAF00002830742 | fastq.gz | 4.4 GB | ||
| EGAF00002830743 | fastq.gz | 3.6 GB | ||
| EGAF00002830744 | fastq.gz | 4.5 GB | ||
| EGAF00002830745 | fastq.gz | 3.7 GB | ||
| EGAF00002830746 | fastq.gz | 4.6 GB | ||
| EGAF00002830747 | fastq.gz | 3.6 GB | ||
| EGAF00002830748 | fastq.gz | 4.4 GB | ||
| EGAF00002830749 | fastq.gz | 3.6 GB | ||
| EGAF00002830750 | fastq.gz | 4.4 GB | ||
| EGAF00002830751 | fastq.gz | 6.5 GB | ||
| EGAF00002830752 | fastq.gz | 6.3 GB | ||
| EGAF00002830753 | fastq.gz | 3.8 GB | ||
| EGAF00002830754 | fastq.gz | 4.7 GB | ||
| EGAF00002830755 | fastq.gz | 3.6 GB | ||
| EGAF00002830756 | fastq.gz | 4.4 GB | ||
| EGAF00002830757 | fastq.gz | 3.8 GB | ||
| EGAF00002830758 | fastq.gz | 4.6 GB | ||
| EGAF00002830759 | fastq.gz | 3.8 GB | ||
| EGAF00002830760 | fastq.gz | 4.8 GB | ||
| EGAF00002830761 | fastq.gz | 4.0 GB | ||
| EGAF00002830762 | fastq.gz | 4.9 GB | ||
| EGAF00002830763 | fastq.gz | 4.7 GB | ||
| EGAF00002830764 | fastq.gz | 5.9 GB | ||
| EGAF00002830765 | fastq.gz | 3.9 GB | ||
| EGAF00002830766 | fastq.gz | 4.7 GB | ||
| EGAF00002830767 | fastq.gz | 4.9 GB | ||
| EGAF00002830768 | fastq.gz | 6.0 GB | ||
| EGAF00002830769 | fastq.gz | 4.4 GB | ||
| EGAF00002830770 | fastq.gz | 5.4 GB | ||
| EGAF00002830771 | fastq.gz | 3.7 GB | ||
| EGAF00002830772 | fastq.gz | 4.5 GB | ||
| EGAF00002830773 | fastq.gz | 4.7 GB | ||
| EGAF00002830774 | fastq.gz | 5.9 GB | ||
| EGAF00002830775 | fastq.gz | 3.6 GB | ||
| EGAF00002830776 | fastq.gz | 4.5 GB | ||
| EGAF00002830777 | fastq.gz | 4.1 GB | ||
| EGAF00002830778 | fastq.gz | 5.0 GB | ||
| EGAF00002830779 | fastq.gz | 4.9 GB | ||
| EGAF00002830780 | fastq.gz | 6.1 GB | ||
| EGAF00002830781 | fastq.gz | 4.3 GB | ||
| EGAF00002830782 | fastq.gz | 5.3 GB | ||
| EGAF00002830783 | fastq.gz | 4.8 GB | ||
| EGAF00002830784 | fastq.gz | 6.1 GB | ||
| EGAF00002830785 | fastq.gz | 4.9 GB | ||
| EGAF00002830786 | fastq.gz | 6.1 GB | ||
| EGAF00002830787 | fastq.gz | 3.9 GB | ||
| EGAF00002830788 | fastq.gz | 4.8 GB | ||
| EGAF00002830789 | fastq.gz | 4.3 GB | ||
| EGAF00002830790 | fastq.gz | 5.2 GB | ||
| EGAF00002830791 | fastq.gz | 4.2 GB | ||
| EGAF00002830792 | fastq.gz | 5.1 GB | ||
| EGAF00002830793 | fastq.gz | 4.8 GB | ||
| EGAF00002830794 | fastq.gz | 5.9 GB | ||
| EGAF00002830795 | fastq.gz | 4.3 GB | ||
| EGAF00002830796 | fastq.gz | 5.3 GB | ||
| EGAF00002830797 | fastq.gz | 4.7 GB | ||
| EGAF00002830798 | fastq.gz | 5.8 GB | ||
| EGAF00002830799 | fastq.gz | 3.5 GB | ||
| EGAF00002830800 | fastq.gz | 4.4 GB | ||
| EGAF00002830801 | fastq.gz | 4.1 GB | ||
| EGAF00002830802 | fastq.gz | 5.0 GB | ||
| EGAF00002830803 | fastq.gz | 4.1 GB | ||
| EGAF00002830804 | fastq.gz | 5.1 GB | ||
| EGAF00002830805 | fastq.gz | 4.8 GB | ||
| EGAF00002830806 | fastq.gz | 5.6 GB | ||
| EGAF00002830807 | fastq.gz | 4.7 GB | ||
| EGAF00002830808 | fastq.gz | 5.9 GB | ||
| EGAF00002830809 | fastq.gz | 4.0 GB | ||
| EGAF00002830810 | fastq.gz | 5.0 GB | ||
| EGAF00002830811 | fastq.gz | 4.2 GB | ||
| EGAF00002830812 | fastq.gz | 5.1 GB | ||
| EGAF00002830813 | fastq.gz | 5.0 GB | ||
| EGAF00002830814 | fastq.gz | 6.3 GB | ||
| EGAF00002830815 | fastq.gz | 3.8 GB | ||
| EGAF00002830816 | fastq.gz | 4.6 GB | ||
| EGAF00002830817 | fastq.gz | 4.0 GB | ||
| EGAF00002830818 | fastq.gz | 5.0 GB | ||
| EGAF00002830819 | fastq.gz | 3.8 GB | ||
| EGAF00002830820 | fastq.gz | 4.7 GB | ||
| EGAF00002830821 | fastq.gz | 4.1 GB | ||
| EGAF00002830822 | fastq.gz | 5.1 GB | ||
| EGAF00002830823 | fastq.gz | 3.8 GB | ||
| EGAF00002830824 | fastq.gz | 4.7 GB | ||
| EGAF00002830825 | fastq.gz | 5.4 GB | ||
| EGAF00002830826 | fastq.gz | 6.5 GB | ||
| EGAF00002830827 | fastq.gz | 4.6 GB | ||
| EGAF00002830828 | fastq.gz | 5.7 GB | ||
| EGAF00002830829 | fastq.gz | 4.0 GB | ||
| EGAF00002830830 | fastq.gz | 4.9 GB | ||
| EGAF00002830831 | fastq.gz | 4.0 GB | ||
| EGAF00002830832 | fastq.gz | 5.0 GB | ||
| EGAF00002830833 | fastq.gz | 3.8 GB | ||
| EGAF00002830834 | fastq.gz | 4.6 GB | ||
| EGAF00002830835 | fastq.gz | 3.8 GB | ||
| EGAF00002830836 | fastq.gz | 4.6 GB | ||
| EGAF00002830837 | fastq.gz | 4.5 GB | ||
| EGAF00002830838 | fastq.gz | 5.6 GB | ||
| EGAF00002830839 | fastq.gz | 4.8 GB | ||
| EGAF00002830840 | fastq.gz | 6.0 GB | ||
| EGAF00002830841 | fastq.gz | 5.9 GB | ||
| EGAF00002830842 | fastq.gz | 7.2 GB | ||
| EGAF00002830843 | fastq.gz | 4.9 GB | ||
| EGAF00002830844 | fastq.gz | 6.1 GB | ||
| EGAF00002830845 | fastq.gz | 4.8 GB | ||
| EGAF00002830846 | fastq.gz | 5.9 GB | ||
| EGAF00002830847 | fastq.gz | 4.7 GB | ||
| EGAF00002830848 | fastq.gz | 5.9 GB | ||
| EGAF00002830849 | fastq.gz | 3.8 GB | ||
| EGAF00002830850 | fastq.gz | 4.6 GB | ||
| EGAF00002830851 | fastq.gz | 3.9 GB | ||
| EGAF00002830852 | fastq.gz | 4.8 GB | ||
| 296 Files (1.3 TB) | ||||