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WGS data of patients diagnosed with NKTL

Whole-genome sequencing (WGS) was performed for 50 pairs of tumor-normal samples from patients diagnosed with NKTL. Genomic DNA from tumor tissue was extracted with QIAamp DNA Mini Kit. The DNA for the matching normal was obtained from blood or buccal swabs and purified by Blood and Cell Culture DNA Mini kit or E.Z.N.A. Tissue DNA Kit (Omega Bio-tek) according to manufacturer’s instructions. The quantity and quality were assessed by Quant-iT PicoGreen dsDNA Assay Kit (Invitrogen) and agarose gel electrophoresis. All sequencing libraries were prepared using TruSeq Nano DNA Library Prep Kit (Illumina). Paired-end sequencing was performed on Illumina HiSeq 2000 or HiSeq X Ten as 2x101 bp or 2x151 bp, respectively.

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Data access policy for NKTL study. National Cancer Centre Singapore.

Contact corresponding author for data access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001589934 fastq.gz 70.8 GB
EGAF00001589935 fastq.gz 82.2 GB
EGAF00001589936 fastq.gz 69.5 GB
EGAF00001589937 fastq.gz 80.2 GB
EGAF00001589938 fastq.gz 64.1 GB
EGAF00001589939 fastq.gz 63.6 GB
EGAF00001589940 fastq.gz 68.3 GB
EGAF00001589941 fastq.gz 68.7 GB
EGAF00001589942 fastq.gz 64.9 GB
EGAF00001589943 fastq.gz 64.5 GB
EGAF00001589944 fastq.gz 64.5 GB
EGAF00001589945 fastq.gz 64.1 GB
EGAF00001589946 fastq.gz 27.9 GB
EGAF00001589947 fastq.gz 32.4 GB
EGAF00001589948 fastq.gz 84.9 GB
EGAF00001589949 fastq.gz 98.0 GB
EGAF00001589950 fastq.gz 30.7 GB
EGAF00001589951 fastq.gz 35.4 GB
EGAF00001589952 fastq.gz 63.2 GB
EGAF00001589953 fastq.gz 72.6 GB
EGAF00001589954 fastq.gz 39.3 GB
EGAF00001589955 fastq.gz 45.7 GB
EGAF00001589956 fastq.gz 36.1 GB
EGAF00001589957 fastq.gz 41.7 GB
EGAF00001589958 fastq.gz 46.8 GB
EGAF00001589959 fastq.gz 50.3 GB
EGAF00001589960 fastq.gz 43.5 GB
EGAF00001589961 fastq.gz 45.6 GB
EGAF00001589962 fastq.gz 33.2 GB
EGAF00001589963 fastq.gz 36.8 GB
EGAF00001589964 fastq.gz 31.8 GB
EGAF00001589965 fastq.gz 35.4 GB
EGAF00001589966 fastq.gz 30.6 GB
EGAF00001589967 fastq.gz 33.9 GB
EGAF00001589968 fastq.gz 31.2 GB
EGAF00001589969 fastq.gz 34.6 GB
EGAF00001589970 fastq.gz 43.0 GB
EGAF00001589971 fastq.gz 48.0 GB
EGAF00001589972 fastq.gz 45.2 GB
EGAF00001589973 fastq.gz 49.7 GB
EGAF00001589974 fastq.gz 48.7 GB
EGAF00001589975 fastq.gz 51.5 GB
EGAF00001589976 fastq.gz 44.6 GB
EGAF00001589977 fastq.gz 48.7 GB
EGAF00001589978 fastq.gz 30.7 GB
EGAF00001589979 fastq.gz 35.9 GB
EGAF00001589980 fastq.gz 67.3 GB
EGAF00001589981 fastq.gz 78.1 GB
EGAF00001589982 fastq.gz 29.8 GB
EGAF00001589983 fastq.gz 34.5 GB
EGAF00001589984 fastq.gz 59.2 GB
EGAF00001589985 fastq.gz 66.5 GB
EGAF00001589986 fastq.gz 32.8 GB
EGAF00001589987 fastq.gz 37.9 GB
EGAF00001589988 fastq.gz 64.6 GB
EGAF00001589989 fastq.gz 72.8 GB
EGAF00001589990 fastq.gz 72.6 GB
EGAF00001589991 fastq.gz 81.3 GB
EGAF00001589992 fastq.gz 69.8 GB
EGAF00001589993 fastq.gz 80.1 GB
EGAF00001589994 fastq.gz 34.6 GB
EGAF00001589995 fastq.gz 40.3 GB
EGAF00001589996 fastq.gz 60.4 GB
EGAF00001589997 fastq.gz 69.6 GB
EGAF00001589998 fastq.gz 32.3 GB
EGAF00001589999 fastq.gz 36.9 GB
EGAF00001590000 fastq.gz 78.9 GB
EGAF00001590001 fastq.gz 88.7 GB
EGAF00001590002 fastq.gz 32.4 GB
EGAF00001590003 fastq.gz 37.0 GB
EGAF00001590004 fastq.gz 62.7 GB
EGAF00001590005 fastq.gz 70.2 GB
EGAF00001590006 fastq.gz 33.5 GB
EGAF00001590007 fastq.gz 38.2 GB
EGAF00001590008 fastq.gz 55.6 GB
EGAF00001590009 fastq.gz 64.7 GB
EGAF00001590010 fastq.gz 31.6 GB
EGAF00001590011 fastq.gz 35.7 GB
EGAF00001590012 fastq.gz 80.5 GB
EGAF00001590013 fastq.gz 90.4 GB
EGAF00001590014 fastq.gz 30.5 GB
EGAF00001590015 fastq.gz 34.6 GB
EGAF00001590016 fastq.gz 62.3 GB
EGAF00001590017 fastq.gz 70.0 GB
EGAF00001590018 fastq.gz 49.2 GB
EGAF00001590019 fastq.gz 59.5 GB
EGAF00001590020 fastq.gz 60.9 GB
EGAF00001590021 fastq.gz 69.2 GB
EGAF00001590022 fastq.gz 33.2 GB
EGAF00001590023 fastq.gz 38.8 GB
EGAF00001590024 fastq.gz 61.9 GB
EGAF00001590025 fastq.gz 71.6 GB
EGAF00001590026 fastq.gz 32.0 GB
EGAF00001590027 fastq.gz 37.6 GB
EGAF00001590028 fastq.gz 62.3 GB
EGAF00001590029 fastq.gz 71.9 GB
EGAF00001590030 fastq.gz 29.9 GB
EGAF00001590031 fastq.gz 34.9 GB
EGAF00001590032 fastq.gz 61.4 GB
EGAF00001590033 fastq.gz 70.6 GB
EGAF00001590034 fastq.gz 30.3 GB
EGAF00001590035 fastq.gz 35.2 GB
EGAF00001590036 fastq.gz 66.2 GB
EGAF00001590037 fastq.gz 76.9 GB
EGAF00002010819 fastq.gz 34.1 GB
EGAF00002010820 fastq.gz 37.7 GB
EGAF00002010821 fastq.gz 33.7 GB
EGAF00002010822 fastq.gz 37.4 GB
EGAF00002010825 fastq.gz 28.5 GB
EGAF00002010826 fastq.gz 34.5 GB
EGAF00002010827 fastq.gz 33.7 GB
EGAF00002010828 fastq.gz 40.1 GB
EGAF00002010829 fastq.gz 33.3 GB
EGAF00002010830 fastq.gz 40.4 GB
EGAF00002010831 fastq.gz 21.5 GB
EGAF00002010832 fastq.gz 24.2 GB
EGAF00002010833 fastq.gz 33.6 GB
EGAF00002010834 fastq.gz 40.9 GB
EGAF00002010835 fastq.gz 34.2 GB
EGAF00002010836 fastq.gz 40.1 GB
EGAF00002010837 fastq.gz 59.4 GB
EGAF00002010838 fastq.gz 71.2 GB
EGAF00002010839 fastq.gz 61.3 GB
EGAF00002010840 fastq.gz 74.7 GB
EGAF00002010843 fastq.gz 63.1 GB
EGAF00002010844 fastq.gz 77.1 GB
EGAF00002010845 fastq.gz 60.7 GB
EGAF00002010846 fastq.gz 73.1 GB
EGAF00002010847 fastq.gz 63.3 GB
EGAF00002010848 fastq.gz 76.1 GB
EGAF00002010849 fastq.gz 62.6 GB
EGAF00002010850 fastq.gz 74.4 GB
EGAF00002010851 fastq.gz 61.2 GB
EGAF00002010852 fastq.gz 72.1 GB
EGAF00002010853 fastq.gz 64.5 GB
EGAF00002010854 fastq.gz 77.5 GB
EGAF00002015424 fastq.gz 60.6 GB
EGAF00002015425 fastq.gz 71.2 GB
EGAF00002015436 fastq.gz 61.1 GB
EGAF00002015437 fastq.gz 70.6 GB
EGAF00002548963 fastq.gz 23.4 GB
EGAF00002548964 fastq.gz 24.7 GB
EGAF00002548965 fastq.gz 63.9 GB
EGAF00002548966 fastq.gz 67.3 GB
EGAF00002548967 fastq.gz 33.4 GB
EGAF00002548968 fastq.gz 35.9 GB
EGAF00002548969 fastq.gz 58.4 GB
EGAF00002548970 fastq.gz 59.9 GB
EGAF00002548971 fastq.gz 30.5 GB
EGAF00002548972 fastq.gz 33.4 GB
EGAF00002548973 fastq.gz 74.3 GB
EGAF00002548974 fastq.gz 76.2 GB
EGAF00002548979 fastq.gz 36.6 GB
EGAF00002548980 fastq.gz 38.6 GB
EGAF00002548981 fastq.gz 72.0 GB
EGAF00002548982 fastq.gz 76.1 GB
EGAF00002548987 fastq.gz 31.1 GB
EGAF00002548988 fastq.gz 34.2 GB
EGAF00002548989 fastq.gz 58.1 GB
EGAF00002548990 fastq.gz 62.8 GB
EGAF00002548991 fastq.gz 34.2 GB
EGAF00002548992 fastq.gz 35.9 GB
EGAF00002548993 fastq.gz 65.9 GB
EGAF00002548994 fastq.gz 69.4 GB
EGAF00002548995 fastq.gz 27.8 GB
EGAF00002548996 fastq.gz 29.0 GB
EGAF00002548997 fastq.gz 63.2 GB
EGAF00002548998 fastq.gz 66.4 GB
EGAF00002548999 fastq.gz 47.8 GB
EGAF00002549000 fastq.gz 50.2 GB
EGAF00002549001 fastq.gz 70.0 GB
EGAF00002549002 fastq.gz 74.2 GB
EGAF00002549003 fastq.gz 37.5 GB
EGAF00002549004 fastq.gz 40.7 GB
EGAF00002549005 fastq.gz 77.6 GB
EGAF00002549006 fastq.gz 82.3 GB
EGAF00002549011 fastq.gz 34.4 GB
EGAF00002549012 fastq.gz 36.1 GB
EGAF00002549013 fastq.gz 56.1 GB
EGAF00002549014 fastq.gz 59.8 GB
EGAF00002549015 fastq.gz 36.9 GB
EGAF00002549016 fastq.gz 38.2 GB
EGAF00002549017 fastq.gz 62.7 GB
EGAF00002549018 fastq.gz 65.8 GB
EGAF00002549019 fastq.gz 41.7 GB
EGAF00002549020 fastq.gz 43.5 GB
EGAF00002549021 fastq.gz 58.5 GB
EGAF00002549022 fastq.gz 61.3 GB
EGAF00002549023 fastq.gz 35.3 GB
EGAF00002549024 fastq.gz 37.4 GB
EGAF00002549025 fastq.gz 75.5 GB
EGAF00002549026 fastq.gz 79.5 GB
EGAF00002549027 fastq.gz 34.0 GB
EGAF00002549028 fastq.gz 36.6 GB
EGAF00002549029 fastq.gz 62.1 GB
EGAF00002549030 fastq.gz 64.1 GB
EGAF00002549031 fastq.gz 34.3 GB
EGAF00002549032 fastq.gz 37.8 GB
EGAF00002549033 fastq.gz 66.2 GB
EGAF00002549034 fastq.gz 71.8 GB
EGAF00002549035 fastq.gz 36.7 GB
EGAF00002549036 fastq.gz 40.2 GB
EGAF00002549037 fastq.gz 63.7 GB
EGAF00002549038 fastq.gz 67.4 GB
204 Files (10.7 TB)