WTS data of patients diagnosed with NKTL
Whole-transcriptome sequencing (WTS) of 36 samples from patients diagnosed with NKTL. Total RNA from snap frozen EITL tumor samples was extracted using TRIzol (Invitrogen) and purified with RNeasy Mini Kit (Qiagen) according to manufacturer’s instructions. The integrity of RNA was determined by electrophoresis using 2100 Bioanalyzer (Agilent Technologies). 500 ng of total RNA was reverse transcribed with iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA, USA). Quantification was performed using SsoFast EvaGreen Supermix and CFX96 Real-Time PCR System (both Bio-Rad). Sequencing libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero (Illumina) and WTS was performed on HiSeq 2500 and HiSeq 3000 (Illumina) with 2x101 bp and 2x151 bp read length, respectively.
- 36 samples
- DAC: EGAC00001000640
- Technologies: HiSeq X Ten, Illumina HiSeq 2000, Illumina HiSeq 2500
Data access policy for NKTL study. National Cancer Centre Singapore.
Contact corresponding author for data access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002420 | Other | |
| EGAS00001003828 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002018373 | fq.gz | 3.2 GB | ||
| EGAF00002018374 | fq.gz | 3.3 GB | ||
| EGAF00002018375 | fq.gz | 2.9 GB | ||
| EGAF00002018376 | fq.gz | 3.1 GB | ||
| EGAF00002018377 | fq.gz | 5.6 GB | ||
| EGAF00002018378 | fq.gz | 5.8 GB | ||
| EGAF00002018379 | fq.gz | 2.4 GB | ||
| EGAF00002018380 | fq.gz | 2.6 GB | ||
| EGAF00002018381 | fq.gz | 2.7 GB | ||
| EGAF00002018382 | fq.gz | 2.9 GB | ||
| EGAF00002018383 | fq.gz | 3.5 GB | ||
| EGAF00002018384 | fq.gz | 3.6 GB | ||
| EGAF00002018385 | fq.gz | 2.9 GB | ||
| EGAF00002018386 | fq.gz | 3.0 GB | ||
| EGAF00002018387 | fq.gz | 3.1 GB | ||
| EGAF00002018388 | fq.gz | 3.3 GB | ||
| EGAF00002018389 | fq.gz | 7.3 GB | ||
| EGAF00002018390 | fq.gz | 7.5 GB | ||
| EGAF00002018391 | fq.gz | 5.1 GB | ||
| EGAF00002018392 | fq.gz | 5.2 GB | ||
| EGAF00002018393 | fq.gz | 6.8 GB | ||
| EGAF00002018394 | fq.gz | 7.0 GB | ||
| EGAF00002018395 | fq.gz | 6.1 GB | ||
| EGAF00002018396 | fq.gz | 6.2 GB | ||
| EGAF00002018397 | fq.gz | 5.4 GB | ||
| EGAF00002018398 | fq.gz | 5.9 GB | ||
| EGAF00002018399 | fq.gz | 3.6 GB | ||
| EGAF00002018400 | fq.gz | 4.5 GB | ||
| EGAF00002018401 | fq.gz | 2.3 GB | ||
| EGAF00002018402 | fq.gz | 2.9 GB | ||
| EGAF00002018405 | fq.gz | 2.8 GB | ||
| EGAF00002018406 | fq.gz | 3.6 GB | ||
| EGAF00002018407 | fq.gz | 3.8 GB | ||
| EGAF00002018408 | fq.gz | 4.9 GB | ||
| EGAF00002018409 | fq.gz | 3.7 GB | ||
| EGAF00002018410 | fq.gz | 4.6 GB | ||
| EGAF00002018411 | fq.gz | 2.9 GB | ||
| EGAF00002018412 | fq.gz | 3.0 GB | ||
| EGAF00002018413 | fq.gz | 3.8 GB | ||
| EGAF00002018414 | fq.gz | 5.0 GB | ||
| EGAF00002018415 | fq.gz | 2.5 GB | ||
| EGAF00002018416 | fq.gz | 3.1 GB | ||
| EGAF00002018417 | fq.gz | 3.5 GB | ||
| EGAF00002018418 | fq.gz | 4.4 GB | ||
| EGAF00002018421 | fq.gz | 4.4 GB | ||
| EGAF00002018422 | fq.gz | 4.6 GB | ||
| EGAF00002018423 | fq.gz | 3.1 GB | ||
| EGAF00002018424 | fq.gz | 3.1 GB | ||
| EGAF00002018425 | fq.gz | 5.2 GB | ||
| EGAF00002018426 | fq.gz | 5.3 GB | ||
| EGAF00002018427 | fq.gz | 3.0 GB | ||
| EGAF00002018428 | fq.gz | 3.1 GB | ||
| EGAF00002545038 | fq.gz | 3.0 GB | ||
| EGAF00002545039 | fq.gz | 3.2 GB | ||
| EGAF00002545042 | fq.gz | 3.3 GB | ||
| EGAF00002545043 | fq.gz | 3.5 GB | ||
| EGAF00002545044 | fq.gz | 2.9 GB | ||
| EGAF00002545045 | fq.gz | 3.2 GB | ||
| EGAF00002545046 | fq.gz | 3.3 GB | ||
| EGAF00002545047 | fq.gz | 3.6 GB | ||
| EGAF00002545048 | fq.gz | 4.0 GB | ||
| EGAF00002545049 | fq.gz | 4.3 GB | ||
| EGAF00002545052 | fq.gz | 3.1 GB | ||
| EGAF00002545053 | fq.gz | 3.3 GB | ||
| EGAF00002545054 | fq.gz | 4.3 GB | ||
| EGAF00002545055 | fq.gz | 4.6 GB | ||
| EGAF00002545058 | fq.gz | 3.2 GB | ||
| EGAF00002545059 | fq.gz | 3.5 GB | ||
| EGAF00002545060 | fq.gz | 3.0 GB | ||
| EGAF00002545061 | fq.gz | 3.2 GB | ||
| EGAF00002545062 | fq.gz | 4.1 GB | ||
| EGAF00002545063 | fq.gz | 4.4 GB | ||
| 72 Files (284.1 GB) | ||||