BAM files of total RNA-Seq data of POPS control samples (GRCh37)
Placental biopsies (n = 64 female placentas, n = 67 male placentas) were selected from healthy pregnancies from the POPs cohort. A quality control process was also applied for the RNA-Seq datasets: reads were trimmed with Trim Galore!, which uses cutadapt internally and were mapped to the same version of human genome reference (hg19). TopHat2, a splice-aware mapper built on top of Bowtie2 short-read aligner, was used in the mapping process in which so-called two-pass (or two-scan) alignment protocol was applied to rescue unmapped reads from the initial mapping step. In the second mapping, previously unmapped reads were re-aligned to the exon-intron junctions detected in the first-mapping by TopHat2 and were combined across all 131 placenta samples. The initial and second mapped reads were merged by samtools
- 147 samples
- DAC: EGAC00001000582
- Technology: Illumina HiSeq 4000
- HMB DUO:0000006 (version: 2019-01-07)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
POPS data access policy
You are not authroised to access POPS data unless you have a written permission from the data access committee which you can contact below: D. Stephen Charnock-Jones. Professor of Reproductive Biology. Department of Obstetrics and Gynaecology. University of Cambridge. The Rosie Hospital, Cambridge. CB2 0SW UK email dscj1@cam.ac.uk Tel +44 1223 336875 Fax +44 1223 215327
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001707088 | bam | 4.2 GB | ||
| EGAF00001707089 | bam | 3.6 GB | ||
| EGAF00001707090 | bam | 3.3 GB | ||
| EGAF00001707091 | bam | 4.5 GB | ||
| EGAF00001707092 | bam | 3.9 GB | ||
| EGAF00001707093 | bam | 3.1 GB | ||
| EGAF00001707094 | bam | 5.3 GB | ||
| EGAF00001707095 | bam | 4.8 GB | ||
| EGAF00001707096 | bam | 4.4 GB | ||
| EGAF00001707097 | bam | 4.4 GB | ||
| EGAF00001707098 | bam | 4.3 GB | ||
| EGAF00001707099 | bam | 6.0 GB | ||
| EGAF00001707100 | bam | 4.5 GB | ||
| EGAF00001707101 | bam | 3.6 GB | ||
| EGAF00001707102 | bam | 4.4 GB | ||
| EGAF00001707103 | bam | 3.8 GB | ||
| EGAF00001707104 | bam | 4.0 GB | ||
| EGAF00001707105 | bam | 4.8 GB | ||
| EGAF00001707106 | bam | 4.8 GB | ||
| EGAF00001707107 | bam | 4.3 GB | ||
| EGAF00001707108 | bam | 4.8 GB | ||
| EGAF00001707109 | bam | 4.5 GB | ||
| EGAF00001707110 | bam | 4.0 GB | ||
| EGAF00001707111 | bam | 5.0 GB | ||
| EGAF00001707112 | bam | 4.1 GB | ||
| EGAF00001707113 | bam | 4.5 GB | ||
| EGAF00001707114 | bam | 5.0 GB | ||
| EGAF00001707115 | bam | 4.3 GB | ||
| EGAF00001707116 | bam | 4.4 GB | ||
| EGAF00001707117 | bam | 4.0 GB | ||
| EGAF00001707118 | bam | 4.7 GB | ||
| EGAF00001707119 | bam | 3.8 GB | ||
| EGAF00001707120 | bam | 3.9 GB | ||
| EGAF00001707121 | bam | 4.2 GB | ||
| EGAF00001707122 | bam | 4.7 GB | ||
| EGAF00001707123 | bam | 4.2 GB | ||
| EGAF00001707124 | bam | 5.2 GB | ||
| EGAF00001707125 | bam | 4.5 GB | ||
| EGAF00001707126 | bam | 4.2 GB | ||
| EGAF00001707127 | bam | 4.0 GB | ||
| EGAF00001707128 | bam | 3.5 GB | ||
| EGAF00001707129 | bam | 4.4 GB | ||
| EGAF00001707130 | bam | 4.6 GB | ||
| EGAF00001707131 | bam | 3.3 GB | ||
| EGAF00001707132 | bam | 4.6 GB | ||
| EGAF00001707133 | bam | 3.4 GB | ||
| EGAF00001707134 | bam | 3.8 GB | ||
| EGAF00001707135 | bam | 3.4 GB | ||
| EGAF00001707136 | bam | 3.5 GB | ||
| EGAF00001707137 | bam | 3.1 GB | ||
| EGAF00001707138 | bam | 5.7 GB | ||
| EGAF00001707139 | bam | 3.9 GB | ||
| EGAF00001707140 | bam | 5.0 GB | ||
| EGAF00001707141 | bam | 4.3 GB | ||
| EGAF00001707142 | bam | 3.7 GB | ||
| EGAF00001707143 | bam | 4.5 GB | ||
| EGAF00001707144 | bam | 4.4 GB | ||
| EGAF00001707145 | bam | 4.2 GB | ||
| EGAF00001707146 | bam | 5.4 GB | ||
| EGAF00001707147 | bam | 3.8 GB | ||
| EGAF00001707148 | bam | 4.4 GB | ||
| EGAF00001707149 | bam | 4.6 GB | ||
| EGAF00001707150 | bam | 4.1 GB | ||
| EGAF00001707151 | bam | 3.8 GB | ||
| EGAF00001707152 | bam | 4.3 GB | ||
| EGAF00001707153 | bam | 3.9 GB | ||
| EGAF00001707154 | bam | 4.8 GB | ||
| EGAF00001707155 | bam | 3.8 GB | ||
| EGAF00001707156 | bam | 5.4 GB | ||
| EGAF00001707157 | bam | 4.9 GB | ||
| EGAF00001707158 | bam | 4.2 GB | ||
| EGAF00001707159 | bam | 5.1 GB | ||
| EGAF00001707160 | bam | 5.2 GB | ||
| EGAF00001707161 | bam | 4.1 GB | ||
| EGAF00001707162 | bam | 4.3 GB | ||
| EGAF00001707163 | bam | 6.4 GB | ||
| EGAF00001707164 | bam | 5.4 GB | ||
| EGAF00001707165 | bam | 5.7 GB | ||
| EGAF00001707166 | bam | 6.6 GB | ||
| EGAF00001707167 | bam | 6.4 GB | ||
| EGAF00001707168 | bam | 5.7 GB | ||
| EGAF00001707169 | bam | 6.0 GB | ||
| EGAF00001707170 | bam | 6.5 GB | ||
| EGAF00001707171 | bam | 5.2 GB | ||
| EGAF00001707172 | bam | 4.2 GB | ||
| EGAF00001707173 | bam | 5.1 GB | ||
| EGAF00001707174 | bam | 5.1 GB | ||
| EGAF00001707175 | bam | 5.2 GB | ||
| EGAF00001707176 | bam | 4.5 GB | ||
| EGAF00001707177 | bam | 4.3 GB | ||
| EGAF00001707178 | bam | 5.4 GB | ||
| EGAF00001707179 | bam | 7.4 GB | ||
| EGAF00001707180 | bam | 4.9 GB | ||
| EGAF00001707181 | bam | 4.7 GB | ||
| EGAF00001707182 | bam | 5.7 GB | ||
| EGAF00001707183 | bam | 5.2 GB | ||
| EGAF00001707184 | bam | 4.8 GB | ||
| EGAF00001707185 | bam | 5.7 GB | ||
| EGAF00001707186 | bam | 5.7 GB | ||
| EGAF00001707187 | bam | 4.0 GB | ||
| EGAF00001707188 | bam | 5.1 GB | ||
| EGAF00001707189 | bam | 5.3 GB | ||
| EGAF00001707190 | bam | 5.8 GB | ||
| EGAF00001707191 | bam | 6.6 GB | ||
| EGAF00001707192 | bam | 5.6 GB | ||
| EGAF00001707193 | bam | 5.5 GB | ||
| EGAF00001707194 | bam | 5.7 GB | ||
| EGAF00001707195 | bam | 5.5 GB | ||
| EGAF00001707196 | bam | 5.6 GB | ||
| EGAF00001707197 | bam | 5.5 GB | ||
| EGAF00001707198 | bam | 6.3 GB | ||
| EGAF00001707199 | bam | 6.0 GB | ||
| EGAF00001707200 | bam | 6.4 GB | ||
| EGAF00001707201 | bam | 5.8 GB | ||
| EGAF00001707202 | bam | 6.3 GB | ||
| EGAF00001707203 | bam | 5.4 GB | ||
| EGAF00001707204 | bam | 5.3 GB | ||
| EGAF00001707205 | bam | 4.7 GB | ||
| EGAF00001707206 | bam | 5.0 GB | ||
| EGAF00001707207 | bam | 4.8 GB | ||
| EGAF00001707208 | bam | 4.9 GB | ||
| EGAF00001707209 | bam | 4.6 GB | ||
| EGAF00001707210 | bam | 4.7 GB | ||
| EGAF00001707211 | bam | 4.9 GB | ||
| EGAF00001707212 | bam | 5.2 GB | ||
| EGAF00001707213 | bam | 4.3 GB | ||
| EGAF00001707214 | bam | 5.2 GB | ||
| EGAF00001707215 | bam | 4.5 GB | ||
| EGAF00001707216 | bam | 5.1 GB | ||
| EGAF00001707217 | bam | 4.9 GB | ||
| EGAF00001707218 | bam | 4.8 GB | ||
| EGAF00001707219 | bam | 4.8 GB | ||
| EGAF00001707220 | bam | 4.2 GB | ||
| EGAF00001707221 | bam | 3.8 GB | ||
| EGAF00001707222 | bam | 4.0 GB | ||
| EGAF00001707223 | bam | 4.3 GB | ||
| EGAF00001707224 | bam | 4.8 GB | ||
| EGAF00001707225 | bam | 5.2 GB | ||
| EGAF00001707226 | bam | 4.3 GB | ||
| EGAF00001707227 | bam | 4.3 GB | ||
| EGAF00001707228 | bam | 5.5 GB | ||
| EGAF00001707229 | bam | 5.0 GB | ||
| EGAF00001707230 | bam | 5.2 GB | ||
| EGAF00001707231 | bam | 4.4 GB | ||
| EGAF00001707232 | bam | 4.6 GB | ||
| EGAF00001707233 | bam | 4.3 GB | ||
| EGAF00001707234 | bam | 5.0 GB | ||
| 147 Files (697.8 GB) | ||||