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Whole genome sequencing of untreated and castration resistant prostate cancers

Low coverage whole genome sequencing of 27 untreated prostate cancers, 9 castration resistant prostate cancers, and 4 benign prostatic hyperplasias.

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Policy statement for the IBT Prostate Cancer Data Access Committee.

European Genome-Phenome Archivec/o European Bioinformatics InstituteWellcome Trust Genome CampusHinxtonCambridgeCB10 1SDUnited KingdomTo whom it may concern,This document refers to the data set, EGAS00001000526, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the IBT Prostate Cancer Data Access Committee. The Data Access Agreement is available at http://www.uta.fi/pcrc/files/data_access_agreement.pdf.There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the IBT Prostate Cancer Data Access Committee (ibt_pcdac@uta.fi). Please be advised that Matti Annala (matti.annala@uta.fi) is authorized to upload data to the EGA for archiving and distribution as part of your submission process.The following individual, Matti Nykter (matti.nykter@uta.fi, postal address: IBT / Computational Biology, FI-33014 University of Tampere, Finland), will take the role of DAC Administrator and will be responsible for creating and maintaining EGA accounts to enable successful applicants to access the data files submitted and will, therefore, require access to the EGA admin tools.Matti Nykter (matti.nykter@uta.fi) has the authority to contact ega-helpdesk@ebi.ac.uk to request changes to be made to the DAC Administrators contact details, in response to a change in circumstances.We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.Sincerely,Matti Nykter (matti.nykter@uta.fi)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000223784 fq.gz 6.2 GB
EGAF00000223785 fq.gz 6.5 GB
EGAF00000223786 fq.gz 6.2 GB
EGAF00000223787 fq.gz 6.6 GB
EGAF00000223788 fq.gz 6.2 GB
EGAF00000223789 fq.gz 6.5 GB
EGAF00000223790 fq.gz 6.3 GB
EGAF00000223791 fq.gz 6.6 GB
EGAF00000223792 fq.gz 5.7 GB
EGAF00000223793 fq.gz 6.1 GB
EGAF00000223794 fq.gz 6.3 GB
EGAF00000223795 fq.gz 6.5 GB
EGAF00000223796 fq.gz 6.1 GB
EGAF00000223797 fq.gz 6.5 GB
EGAF00000223798 fq.gz 6.0 GB
EGAF00000223799 fq.gz 6.1 GB
EGAF00000223800 fq.gz 6.2 GB
EGAF00000223801 fq.gz 6.5 GB
EGAF00000223802 fq.gz 6.0 GB
EGAF00000223803 fq.gz 6.4 GB
EGAF00000223804 fq.gz 6.0 GB
EGAF00000223805 fq.gz 6.4 GB
EGAF00000223806 fq.gz 6.0 GB
EGAF00000223807 fq.gz 6.1 GB
EGAF00000223808 fq.gz 5.9 GB
EGAF00000223809 fq.gz 6.1 GB
EGAF00000223810 fq.gz 5.8 GB
EGAF00000223811 fq.gz 5.9 GB
EGAF00000223812 fq.gz 6.0 GB
EGAF00000223813 fq.gz 6.1 GB
EGAF00000223814 fq.gz 6.1 GB
EGAF00000223815 fq.gz 6.4 GB
EGAF00000223816 fq.gz 6.2 GB
EGAF00000223817 fq.gz 6.5 GB
EGAF00000223818 fq.gz 6.7 GB
EGAF00000223819 fq.gz 6.9 GB
EGAF00000223820 fq.gz 5.9 GB
EGAF00000223821 fq.gz 6.2 GB
EGAF00000223822 fq.gz 5.9 GB
EGAF00000223823 fq.gz 6.2 GB
EGAF00000223824 fq.gz 5.7 GB
EGAF00000223825 fq.gz 6.0 GB
EGAF00000223826 fq.gz 6.2 GB
EGAF00000223827 fq.gz 6.4 GB
EGAF00000223828 fq.gz 6.1 GB
EGAF00000223829 fq.gz 6.3 GB
EGAF00000223830 fq.gz 6.5 GB
EGAF00000223831 fq.gz 6.7 GB
EGAF00000223832 fq.gz 5.9 GB
EGAF00000223833 fq.gz 6.0 GB
EGAF00000223834 fq.gz 6.0 GB
EGAF00000223835 fq.gz 6.4 GB
EGAF00000223836 fq.gz 6.2 GB
EGAF00000223837 fq.gz 6.5 GB
EGAF00000223838 fq.gz 6.1 GB
EGAF00000223839 fq.gz 6.4 GB
EGAF00000223840 fq.gz 6.0 GB
EGAF00000223841 fq.gz 6.3 GB
EGAF00000223842 fq.gz 6.3 GB
EGAF00000223843 fq.gz 6.6 GB
EGAF00000223844 fq.gz 5.8 GB
EGAF00000223845 fq.gz 6.0 GB
EGAF00000223846 fq.gz 5.9 GB
EGAF00000223847 fq.gz 5.9 GB
EGAF00000223848 fq.gz 5.9 GB
EGAF00000223849 fq.gz 6.0 GB
EGAF00000223850 fq.gz 6.2 GB
EGAF00000223851 fq.gz 6.3 GB
EGAF00000223852 fq.gz 6.0 GB
EGAF00000223853 fq.gz 6.1 GB
EGAF00000223854 fq.gz 6.0 GB
EGAF00000223855 fq.gz 6.1 GB
EGAF00000223856 fq.gz 6.1 GB
EGAF00000223857 fq.gz 6.1 GB
EGAF00000223858 fq.gz 12.5 GB
EGAF00000223859 fq.gz 12.6 GB
EGAF00000223860 fq.gz 6.0 GB
EGAF00000223861 fq.gz 6.0 GB
EGAF00000223862 fq.gz 7.2 GB
EGAF00000223863 fq.gz 7.3 GB
80 Files (509.9 GB)