Data Access Committee of DKFZ-Epigenomics

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This DAC controls 20 datasets

Dataset ID	Description	Technology	Samples
EGAD00001000601	None	Illumina HiSeq 2000	1
EGAD00001000602	None	Illumina HiSeq 2000	1
EGAD00001001675	RNA-seq of peripheral blood samples from CLL patients.	Illumina HiSeq 2000	42
EGAD00001001676	Tagmentation-based whole-genome bisulfite sequencing of isolated cell types from healthy controls.	Illumina HiSeq 2000	12
EGAD00001003419	Whole exome seqeuncing from primary human JMML samples	Illumina HiSeq 2000	50
EGAD00001004791	The dataset contains RNA-seq data of 96 EOPC patients and 9 controls. For some patients multiple tissue samples were sequenced ("multi-area" samples). The RNA extraction and sequencing protocol was earlier described in Weischenfeldt et al, Cancer Cell, 2013.	Illumina HiSeq 2000	1
EGAD00001005109	This dataset contains primary raw data of whole-genome sequencing, whole-genome bisulfite sequencing, ATAC-seq, ChIP-seq (ChIP-mentation) of histone variants and modifications, as well as RNA-seq of giant cell tumor of bone tissue and primary cell line samples.	HiSeq X Ten Illumina HiSeq 2000	29
EGAD00001007504	None	HiSeq X Ten	12
EGAD00001007669	This dataset contains 139 Tumor and Control WGS files for samples for Gerhauser et al.,Cancer Cell, 2018, 34:996-1011. WGS and sequencing protocol was earlier described in Weischenfeldt et al, Cancer Cell, 2013.	HiSeq X Ten Illumina HiSeq 2000	141
EGAD00001007861	This dataset contains 318 Tumor and Control WGS files submitted in another EGA box for samples for Gerhauser et al.,Cancer Cell, 2018, 34:996-1011. WGS and sequencing protocol was earlier described in Weischenfeldt et al, Cancer Cell, 2013.	Illumina HiSeq 2000	320
EGAD00001008198	None	Illumina NovaSeq 6000	1
EGAD00001008199	None	Illumina NovaSeq 6000	1
EGAD00010000646	DNA methylation analysis of 35 prostate tumor and 6 normal prostate samples		41
EGAD00010000871	CLL and normal B cell samples using 450K		226
EGAD00010001296	DNA methylation analysis from primary human JMML and normal blood samples using 450K	Illumina_450K	-
EGAD00010001298	primary human ACC and normal samples using 450K	Illumina_450K	110
EGAD00010001430	Gene expression analysis from primary human JMML samples using Illumina Human HT-12 v4	Illumina_HumanHT-12_V4	15
EGAD00010001879	Control human dermal fibroblasts from patient forearm	Illumina 450k	12
EGAD00010001880	Case human dermal fibroblasts from patient forearm	Illumina 450k	12
EGAD00010002312	Illumina EPIC arrays Naevus Melanoma Spitz Case	Illumina EPIC array	24