This is for CGA demo: Profiling Chromatin Accessibility in Humans Using Adenine Methylation and Long-Read Sequencin

Profiling Chromatin Accessibility in Humans using raw nanopore, base-called, and 6mA frequency data for EcoGII-treated NA12878 and MCF7 chromatin samples. With the massive adoption of next generation sequencing and Nanopore long-read sequencing, we can profile chromatin accessibility. The dataset also includes raw nanopore data for the HG002 EcoGII-treated DNA. The dataset can be used for future research.

Type: Whole Genome Sequencing
Archiver: Federated European Genome-Phenome Archive (FEGA Canada)

1 Dataset 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000000335	Dataset for CGA demo: This dataset includes raw nanopore, base-called, and 6mA frequency data for EcoGII-treated NA12878 and MCF7 chromatin samples. It also includes raw nanopore data for the HG002 EcoGII-treated DNA. The data is sequencing from Nanopore PromethION and can be used for future research.		1

Publications	Citations
Transcriptomic analysis of intestine following administration of a transglutaminase 2 inhibitor to prevent gluten-induced intestinal damage in celiac disease. Dotsenko V, Tewes B, Hils M, Pasternack R, Isola J, Taavela J, Popp A, Sarin J, Huhtala H, Hiltunen P, Zimmermann T, Mohrbacher R, Greinwald R, Lundin KEA, Schuppan D, Mäki M, Viiri K, CEC-3 Investigators. Nat Immunol 25: 2024 1218-1230	0