Papua New Guinean Genome Diversity Project

Papua New Guinean populations have one of the highest genetic diversity of the world. Our dataset provides genomic data covering most of the Papua New Guinean territory (n=58).

Type: Other
Archiver: European Genome-Phenome Archive (EGA)

1 Dataset 4 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001007783	The PGDP dataset includes 58 whole genome sequences for Papua New Guinean individuals from different locations. DNA was extrated from saliva samples (Oragen kit). Sequencing libraries were prepared using the TruSeq DNA PCR-Free HT kit. 150 bp paired-end sequencing was performed on the Illumina HiSeq X5 sequencer. The PGDP dataset provides Fastq and BAM files.	HiSeq X Five	58

Publications	Citations
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul. Brucato N, André M, Tsang R, Saag L, Kariwiga J, Sesuki K, Beni T, Pomat W, Muke J, Meyer V, Boland A, Deleuze JF, Sudoyo H, Mondal M, Pagani L, Gallego Romero I, Metspalu M, Cox MP, Leavesley M, Ricaut FX. Mol Biol Evol 38: 2021 5107-5121	9
Chronology of natural selection in Oceanian genomes. Brucato N, André M, Hudjashov G, Mondal M, Cox MP, Leavesley M, Ricaut FX. iScience 25: 2022 104583	4
Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels. André M, Brucato N, Hudjasov G, Pankratov V, Yermakovich D, Montinaro F, Kreevan R, Kariwiga J, Muke J, Boland A, Deleuze JF, Meyer V, Evans N, Cox MP, Leavesley M, Dannemann M, Org T, Metspalu M, Mondal M, Ricaut FX. Nat Commun 15: 2024 3352	4
Mid-pass whole-genome sequencing in a Malagasy cohort uncovers body composition associations. Hamid I, Raveloson SNS, Spiral GJ, Ravelonjanahary S, Raharivololona BM, Randria JM, Zafimaro M, Randriambola TA, Andriantsoa RM, Andriamahefa TJ, Rafidison BFL, Mughal M, Emde AK, Hendershott M, LeBaron von Baeyer S, Wasik KA, Ranaivoarisoa JF, Yerges-Armstrong L, Castel SE, Rakotoarivony R. HGG Adv 5: 2024 100343	0