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Esophageal Adenocarcinoma Organoid Genomics

Single cell RNA-seq (scRNA-seq) of esophageal adenocarcinoma organoids to benchmark variant calling from 10X Genomics scRNA-seq data. Five EAC organoids were subjected to scRNA-seq and two included matched exome data.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001007525 Illumina HiSeq 4000 5
Publications Citations
scSNV: accurate dscRNA-seq SNV co-expression analysis using duplicate tag collapsing.
Genome Biol 22: 2021 144
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