An epigenetic single-cell atlas of IDH-mutant glioma reveals the role of ATRX in shaping tumor composition
Recent single-cell RNA-sequencing studies have identified a hierarchy of cell types that is common to all isocitrate dehydrogenase (IDH) -mutant gliomas. This finding is somewhat paradoxical since the genetic differences between IDH-mutant astrocytomas and IDH-mutant oligodendrogliomas are prognostic, predictive of therapeutic response, and correlated with differences in immune infiltrates. To integrate these disparate findings, we constructed a single-cell atlas of 22 human IDH-mutant primary untreated grade-II/III gliomas.
- Type: Other
- Archiver: European Genome-Phenome Archive (EGA)
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001006311 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006312 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006313 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006314 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006315 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006316 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006317 | Illumina NovaSeq 6000 | 1 | |
EGAD00001006318 | Illumina NovaSeq 6000 | 2 | |
EGAD00001006319 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008297 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008298 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008299 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008300 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008301 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008302 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008303 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008304 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008305 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008306 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008307 | Illumina NovaSeq 6000 | 1 | |
EGAD00001008308 | Illumina NovaSeq 6000 | 1 |
Publications | Citations |
---|---|
ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma.
Genome Biol 22: 2021 311 |
27 |
Stalled oligodendrocyte differentiation in IDH-mutant gliomas.
Genome Med 15: 2023 24 |
8 |