The evolutionary landscape of colorectal tumorigenesis
The genetic events that cause colorectal adenomas to progress to carcinomas remain largely undetermined. Using multi-region genome/exome sequencing of 24 benign and malignant colorectal tumours, we probe the evolutionary fitness landscape occupied by these neoplasms. Unlike carcinomas, advanced adenomas frequently harbour sub-clonal driver mutations, hence lack selective sweeps, and have relatively high genetic heterogeneity. Carcinomas are distinguished from adenomas not by nucleotide-level mutations (drivers or burden), but by widespread aneusomies that are usually clonal and often accrue in a “punctuated” fashion. Adenomas evolve across an undulating fitness landscape, whereas carcinomas occupy a sharper fitness peak, probably owing to stabilising selection.
- Type: Other
- Archiver: European Genome-Phenome Archive (EGA)
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001004966 | Illumina HiSeq 2500 unspecified | 139 |
Publications | Citations |
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The evolutionary landscape of colorectal tumorigenesis.
Nat Ecol Evol 2: 2018 1661-1672 |
71 |
NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline.
BMC Bioinformatics 20: 2019 264 |
63 |
Subclonal reconstruction of tumors by using machine learning and population genetics.
Nat Genet 52: 2020 898-907 |
51 |
Evolutionary dynamics of neoantigens in growing tumors.
Nat Genet 52: 2020 1057-1066 |
50 |
Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.
Genome Biol 25: 2024 38 |
2 |
Evolving copy number gains promote tumor expansion and bolster mutational diversification.
Nat Commun 15: 2024 2025 |
7 |