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The evolutionary landscape of colorectal tumorigenesis

The genetic events that cause colorectal adenomas to progress to carcinomas remain largely undetermined. Using multi-region genome/exome sequencing of 24 benign and malignant colorectal tumours, we probe the evolutionary fitness landscape occupied by these neoplasms. Unlike carcinomas, advanced adenomas frequently harbour sub-clonal driver mutations, hence lack selective sweeps, and have relatively high genetic heterogeneity. Carcinomas are distinguished from adenomas not by nucleotide-level mutations (drivers or burden), but by widespread aneusomies that are usually clonal and often accrue in a “punctuated” fashion. Adenomas evolve across an undulating fitness landscape, whereas carcinomas occupy a sharper fitness peak, probably owing to stabilising selection.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001004966 Illumina HiSeq 2500 unspecified 139
Publications Citations
The evolutionary landscape of colorectal tumorigenesis.
Nat Ecol Evol 2: 2018 1661-1672
71
NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline.
BMC Bioinformatics 20: 2019 264
63
Subclonal reconstruction of tumors by using machine learning and population genetics.
Nat Genet 52: 2020 898-907
51
Evolutionary dynamics of neoantigens in growing tumors.
Nat Genet 52: 2020 1057-1066
50
Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.
Genome Biol 25: 2024 38
2
Evolving copy number gains promote tumor expansion and bolster mutational diversification.
Nat Commun 15: 2024 2025
7