IHEC DEEP Release August 2016
Additional sequencing data for the German IHEC contribution (DEEP, http://deep.dkfz.de/, http://www.deutsches-epigenom-programm.de/). This is the additional data released in August 2016. Contains datatypes: - Whole Genome Bisulfite sequencing - ChipSeq (H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me3, H3K9me3, Input) - tRNA – not unmapped - mRNA - snRNA - Dnase Hypersensitive sites - RRBS - NOMe
- Type: Other
- Archiver: European Genome-Phenome Archive (EGA)
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001002527 | Illumina HiSeq 2000 Illumina HiSeq 2500 | 46 | |
EGAD00001002735 | Illumina HiSeq 2000 Illumina HiSeq 2500 | 10 | |
EGAD00001003259 | Illumina HiSeq 2000 | 4 | |
EGAD00001005953 | Illumina HiSeq 2500 | 1 |
Publications | Citations |
---|---|
CRUP: a comprehensive framework to predict condition-specific regulatory units.
Genome Biol 20: 2019 227 |
16 |
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications.
Epigenetics Chromatin 13: 2020 20 |
1 |
CpG content-dependent associations between transcription factors and histone modifications.
PLoS One 16: 2021 e0249985 |
0 |
Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcription factor binding models.
Nucleic Acids Res 51: 2023 e95 |
5 |