EGAD00001002072
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample
Illumina HiSeq 2000
23
EGAD00001002073
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
12
EGAD00001002074
RNAseq on Illumina HiSeq2000/2500 of WNT reporter of PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
3
EGAD00001002075
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
1
EGAD00001002076
RNAseq of Patient-derived xenograft derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
19
EGAD00001002077
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample
Illumina HiSeq 2000
87
EGAD00001002078
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
28
EGAD00001002079
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
1
EGAD00001002080
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
37
EGAD00001002081
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
4
EGAD00001002082
Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA
Illumina HiSeq 2000
69
EGAD00001002083
Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue
Illumina HiSeq 2000
2
EGAD00001002084
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample
Illumina HiSeq 2000
23
EGAD00001002085
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
12
EGAD00001002086
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
1
EGAD00001002087
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
19
EGAD00001002088
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample
Illumina HiSeq 2000
87
EGAD00001002089
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
25
EGAD00001002090
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
1
EGAD00001002091
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
38
EGAD00001002092
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
5
EGAD00001002093
Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA
Illumina HiSeq 2000
33
EGAD00001002094
Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue
Illumina HiSeq 2000
2
EGAD00001002095
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample
Illumina HiSeq 2000
14
EGAD00001002096
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
12
EGAD00001002097
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
1
EGAD00001002098
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample
Illumina HiSeq 2000
19
EGAD00001002099
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample
Illumina HiSeq 2000
55
EGAD00001002100
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
25
EGAD00001002101
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
1
EGAD00001002102
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
38
EGAD00001002103
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample
Illumina HiSeq 2000
5
EGAD00001002104
Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA
AB 5500xl Genetic Analyzer
76
EGAD00001002105
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer metastasis sample
AB 5500xl Genetic Analyzer
AB 5500xl-W Genetic Analysis System
16
EGAD00001002106
Whole-exome sequencing on AB 5500xl Genetic Analyzer of Patient-derived xenograft derived from colorectal cancer metastasis sample
AB 5500xl Genetic Analyzer
1
EGAD00001002107
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample
AB 5500xl Genetic Analyzer
AB 5500xl-W Genetic Analysis System
66
EGAD00001002883
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer sample of a validation cohort of 60 PDX
Illumina HiSeq 2000
60
EGAD00001002884
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample at early/late passages
Illumina HiSeq 2000
8
EGAD00001003362
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort)
Illumina HiSeq 2000
49
EGAD00001003363
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort)
Illumina HiSeq 2000
114
EGAD00001003364
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
4
EGAD00001003365
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
1
EGAD00001003366
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
10
EGAD00001003367
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
7
EGAD00001003368
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
1
EGAD00001003369
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
13
EGAD00001003370
Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort)
Illumina HiSeq 2000
10
EGAD00001003371
Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort)
Illumina HiSeq 2000
1
EGAD00001003372
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
4
EGAD00001003373
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
1
EGAD00001003374
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
8
EGAD00001003375
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
7
EGAD00001003376
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
12
EGAD00001003377
Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort)
Illumina HiSeq 2000
10
EGAD00001003378
Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort)
Illumina HiSeq 2000
1
EGAD00001003379
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
4
EGAD00001003380
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
1
EGAD00001003381
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort)
Illumina HiSeq 2000
10
EGAD00001003383
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
7
EGAD00001003384
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort)
Illumina HiSeq 2000
14
EGAD00001003385
Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA (OT2_cohort)
AB 5500 Genetic Analyzer
1
EGAD00001003386
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample (OT2_cohort)
AB 5500 Genetic Analyzer
1
EGAD00010001161
Oncotrack metastatic samples using 450K. The shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets are included on Oncotrack_450K_tumor (EGAD00010001162) dataset.
Illumina 450K
15
EGAD00010001162
Oncotrack primary tumor samples using 450K. The dataset includes shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets.
Illumina 450K
67