Integrative genomic analyses reveal androgen-driven somatic alteration landscape in early-onset prostate cancer
Early-onset prostate cancer (EO-PCA) represents the earliest clinical manifestation of prostate cancer. To compare the genomic alteration landscapes of EO-PCA with "classical" (elderly-onset) PCA, we performed deep sequencing-based genomics analyses in eleven tumors diagnosed at young age, and pursued comparative assessments with seven elderly-onset PCA genomes. Remarkable age-related differences in structural rearrangement (SR) formation became evident, suggesting distinct disease pathomechanisms. Whereas EO-PCAs harbored a prevalence of balanced SRs, with a specific abundance of androgen-regulated ETS gene fusions including TMPRSS2:ERG, elderly-onset PCAs displayed primarily non-androgen-associated SRs. Data from a validation cohort of >10,000 patients showed age-dependent androgen receptor levels and a prevalence of SRs affecting androgen-regulated genes, further substantiating the activity of a characteristic "androgen-type" pathomechanism in EO-PCA.
- Type: Other
- Archiver: European Genome-Phenome Archive (EGA)
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001000303 | Illumina Genome Analyzer IIx | 22 | |
EGAD00001000304 | Illumina HiSeq 2000 | 8 | |
EGAD00001000305 | Illumina HiSeq 2000 | 12 | |
EGAD00001000306 | Illumina HiSeq 2000 | 22 | |
EGAD00001000632 | AB SOLiD 4 System | 12 | |
EGAD00001007861 | Illumina HiSeq 2000 | 320 |
Publications | Citations |
---|---|
Integrative genomic analyses reveal an androgen-driven somatic alteration landscape in early-onset prostate cancer.
Cancer Cell 23: 2013 159-170 |
211 |
Transcription-mediated chimeric RNAs in prostate cancer: time to revisit old hypothesis?
OMICS 18: 2014 615-624 |
22 |
Quantifying the influence of mutation detection on tumour subclonal reconstruction.
Nat Commun 11: 2020 6247 |
12 |
The telomere length landscape of prostate cancer.
Nat Commun 12: 2021 6893 |
9 |
The impact of telomere length on prostate cancer aggressiveness, genomic instability and health disparities.
Sci Rep 14: 2024 7706 |
1 |