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DNA methylation-based classification of sinonasal tumors [Proteomics data]

This dataset includes raw label-free mass spectrometry proteomics data of different sinonasal tumor entities as well as normal sinonasal tissue. 72 samples were processed on a Q Exactive HF-X instrument coupled to an easy nanoLC 1200 system using one microgram of peptides and an 110 minutes gradient.

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Standard DAP Institute of Pathology LMU Munich

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Institute of Pathology LMU Munich grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Institute of Pathology LMU Munich and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The Institute of Pathology LMU Munich: Institute of Pathology LMU Munich, Thalkirchner Straße 36, 80337 München, Germany 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the Institute of Pathology LMU Munich within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the Institute of Pathology LMU Munich prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the Institute of Pathology LMU Munich as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Institute of Pathology LMU Munich may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than the Institute of Pathology LMU Munich. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. The User has to follow the General Data Protection Regulation (GDPR) as issued by the European Union (2016/679). If the User's institution is not part of the European Union, an appropriate Data Protection Policy has to be issued by the User, which will be checked by the legal and data privacy department of the LMU Munich. 20. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Germany and shall be subject to the exclusive jurisdiction of the German courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006712 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007420319 raw 1.0 GB
EGAF00007420320 raw 764.9 MB
EGAF00007420321 raw 905.5 MB
EGAF00007420322 raw 969.6 MB
EGAF00007420323 raw 1.0 GB
EGAF00007420324 raw 1.0 GB
EGAF00007420325 raw 876.3 MB
EGAF00007420326 raw 871.9 MB
EGAF00007420327 raw 1.0 GB
EGAF00007420328 raw 1.2 GB
EGAF00007420329 raw 1.0 GB
EGAF00007420330 raw 882.0 MB
EGAF00007420331 raw 905.0 MB
EGAF00007420332 raw 1.2 GB
EGAF00007420333 raw 824.3 MB
EGAF00007420334 raw 898.0 MB
EGAF00007420335 raw 1.1 GB
EGAF00007420336 raw 883.6 MB
EGAF00007420337 raw 994.8 MB
EGAF00007420338 raw 859.2 MB
EGAF00007420339 raw 827.5 MB
EGAF00007420340 raw 996.4 MB
EGAF00007420341 raw 905.0 MB
EGAF00007420342 raw 1.0 GB
EGAF00007420343 raw 946.4 MB
EGAF00007420344 raw 915.1 MB
EGAF00007420345 raw 897.6 MB
EGAF00007420346 raw 865.1 MB
EGAF00007420347 raw 747.7 MB
EGAF00007420348 raw 1.0 GB
EGAF00007420349 raw 954.8 MB
EGAF00007420350 raw 1.2 GB
EGAF00007420351 raw 1.1 GB
EGAF00007420352 raw 898.3 MB
EGAF00007420353 raw 862.1 MB
EGAF00007420354 raw 913.4 MB
EGAF00007420355 raw 1.0 GB
EGAF00007420356 raw 926.9 MB
EGAF00007420357 raw 994.4 MB
EGAF00007420358 raw 1.1 GB
EGAF00007420359 raw 1.0 GB
EGAF00007420360 raw 910.8 MB
EGAF00007420361 raw 1.0 GB
EGAF00007420362 raw 1.0 GB
EGAF00007420363 raw 953.5 MB
EGAF00007420364 raw 922.9 MB
EGAF00007420365 raw 902.4 MB
EGAF00007420366 raw 1.0 GB
EGAF00007420367 raw 1.0 GB
EGAF00007420368 raw 802.3 MB
EGAF00007420369 raw 1.1 GB
EGAF00007420370 raw 910.8 MB
EGAF00007420371 raw 935.7 MB
EGAF00007420372 raw 883.1 MB
EGAF00007420373 raw 943.0 MB
EGAF00007420374 raw 992.7 MB
EGAF00007420375 raw 895.7 MB
EGAF00007420376 raw 870.5 MB
EGAF00007420377 raw 995.4 MB
EGAF00007420378 raw 1.3 GB
EGAF00007420379 raw 1.0 GB
EGAF00007420380 raw 1.1 GB
EGAF00007420381 raw 890.5 MB
EGAF00007420382 raw 900.2 MB
EGAF00007420383 raw 908.6 MB
EGAF00007420384 raw 1.0 GB
EGAF00007420385 raw 938.0 MB
EGAF00007420386 raw 1.0 GB
EGAF00007420387 raw 865.7 MB
EGAF00007420388 raw 898.2 MB
EGAF00007420389 raw 1.0 GB
EGAF00007420390 raw 943.4 MB
72 Files (69.5 GB)