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MethylationEPIC_850K

This dataset includes IDAT files from 160 samples (57 primary prostate cancers, 95 proste-derived brain metastases, and 7 normal tissues). The samples were profiled using the Illumina Infinium MethylationEPIC BeadChips (850K)

Request Access

University of Bern, Department of BioMedical Research (DBMR)

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom The Department for BioMedical Research (DBMR), University of Bern grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Department for BioMedical Research (DBMR), University of Bern and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify The Department for BioMedical Research (DBMR), University of Bern within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify The Department for BioMedical Research (DBMR), University of Bern prior to any significant changes to the protocol for the Project. 14. The User Institution will notify The Department for BioMedical Research (DBMR), University of Bern as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Department for BioMedical Research (DBMR), University of Bern may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than The Department for BioMedical Research (DBMR), University of Bern. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Switzerland and shall be subject to the exclusive jurisdiction of the Swiss courts. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for The Department for BioMedical Research (DBMR), University of Bern Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY The Department for BioMedical Research (DBMR), University of Bern intends to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. The Department for BioMedical Research (DBMR), University of Bern anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 3 months after these data were first made available on the relevant hosting database, unless The Department for BioMedical Research (DBMR), University of Bern has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGASXXXXXXXXXXX), and acknowledge its use in a form agreed by the User Institution with The Department for BioMedical Research (DBMR), University of Bern.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006670 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007932335 idat 13.7 MB
EGAF00007932336 idat 13.7 MB
EGAF00007932337 idat 13.7 MB
EGAF00007932338 idat 13.7 MB
EGAF00007932339 idat 13.7 MB
EGAF00007932340 idat 13.7 MB
EGAF00007932341 idat 13.7 MB
EGAF00007932342 idat 13.7 MB
EGAF00007932343 idat 13.7 MB
EGAF00007932344 idat 13.7 MB
EGAF00007932345 idat 13.7 MB
EGAF00007932346 idat 13.7 MB
EGAF00007932347 idat 13.7 MB
EGAF00007932348 idat 13.7 MB
EGAF00007932349 idat 13.7 MB
EGAF00007932350 idat 13.7 MB
EGAF00007932351 idat 13.7 MB
EGAF00007932352 idat 13.7 MB
EGAF00007932353 idat 13.7 MB
EGAF00007932354 idat 13.7 MB
EGAF00007932355 idat 13.7 MB
EGAF00007932356 idat 13.7 MB
EGAF00007932357 idat 13.7 MB
EGAF00007932358 idat 13.7 MB
EGAF00007932359 idat 13.7 MB
EGAF00007932360 idat 13.7 MB
EGAF00007932361 idat 13.7 MB
EGAF00007932362 idat 13.7 MB
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EGAF00007932364 idat 13.7 MB
EGAF00007932365 idat 13.7 MB
EGAF00007932366 idat 13.7 MB
EGAF00007932367 idat 13.7 MB
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EGAF00007932371 idat 13.7 MB
EGAF00007932372 idat 13.7 MB
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EGAF00007932374 idat 13.7 MB
EGAF00007932375 idat 13.7 MB
EGAF00007932376 idat 13.7 MB
EGAF00007932377 idat 13.7 MB
EGAF00007932378 idat 13.7 MB
EGAF00007932379 idat 13.7 MB
EGAF00007932380 idat 13.7 MB
EGAF00007932381 idat 13.7 MB
EGAF00007932382 idat 13.7 MB
EGAF00007932383 idat 13.7 MB
EGAF00007932384 idat 13.7 MB
EGAF00007932385 idat 13.7 MB
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EGAF00007932387 idat 13.7 MB
EGAF00007932388 idat 13.7 MB
EGAF00007932389 idat 13.7 MB
EGAF00007932390 idat 13.7 MB
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EGAF00007932392 idat 13.7 MB
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EGAF00007932394 idat 13.7 MB
EGAF00007932395 idat 13.7 MB
EGAF00007932396 idat 13.7 MB
EGAF00007932397 idat 13.7 MB
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EGAF00007932400 idat 13.7 MB
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EGAF00007932402 idat 13.7 MB
EGAF00007932403 idat 13.7 MB
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EGAF00007932408 idat 13.7 MB
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EGAF00007932411 idat 13.7 MB
EGAF00007932412 idat 13.7 MB
EGAF00007932413 idat 13.7 MB
EGAF00007932414 idat 13.7 MB
EGAF00007932415 idat 13.7 MB
EGAF00007932416 idat 13.7 MB
EGAF00007932417 idat 13.7 MB
EGAF00007932418 idat 13.7 MB
EGAF00007932419 idat 13.7 MB
EGAF00007932420 idat 13.7 MB
EGAF00007932421 idat 13.7 MB
EGAF00007932422 idat 13.7 MB
EGAF00007932423 idat 13.7 MB
EGAF00007932424 idat 13.7 MB
EGAF00007932425 idat 13.7 MB
EGAF00007932426 idat 13.7 MB
EGAF00007932427 idat 13.7 MB
EGAF00007932428 idat 13.7 MB
EGAF00007932429 idat 13.7 MB
EGAF00007932430 idat 13.7 MB
EGAF00007932431 idat 13.7 MB
EGAF00007932432 idat 13.7 MB
EGAF00007932433 idat 13.7 MB
EGAF00007932434 idat 13.7 MB
EGAF00007932435 idat 13.7 MB
EGAF00007932436 idat 13.7 MB
EGAF00007932437 idat 13.7 MB
EGAF00007932438 idat 13.7 MB
EGAF00007932439 idat 13.7 MB
EGAF00007932440 idat 13.7 MB
EGAF00007932441 idat 13.7 MB
EGAF00007932442 idat 13.7 MB
EGAF00007932443 idat 13.7 MB
EGAF00007932444 idat 13.7 MB
EGAF00007932445 idat 13.7 MB
EGAF00007932446 idat 13.7 MB
EGAF00007932447 idat 13.7 MB
EGAF00007932448 idat 13.7 MB
EGAF00007932449 idat 13.7 MB
EGAF00007932450 idat 13.7 MB
EGAF00007932451 idat 13.7 MB
EGAF00007932452 idat 13.7 MB
EGAF00007932453 idat 13.7 MB
EGAF00007932454 idat 13.7 MB
EGAF00007932455 idat 13.7 MB
EGAF00007932456 idat 13.7 MB
EGAF00007932457 idat 13.7 MB
EGAF00007932458 idat 13.7 MB
EGAF00007932459 idat 13.7 MB
EGAF00007932460 idat 13.7 MB
EGAF00007932461 idat 13.7 MB
EGAF00007932462 idat 13.7 MB
EGAF00007932463 idat 13.7 MB
EGAF00007932464 idat 13.7 MB
EGAF00007932465 idat 13.7 MB
EGAF00007932466 idat 13.7 MB
EGAF00007932467 idat 13.7 MB
EGAF00007932468 idat 13.7 MB
EGAF00007932469 idat 13.7 MB
EGAF00007932470 idat 13.7 MB
EGAF00007932471 idat 13.7 MB
EGAF00007932472 idat 13.7 MB
EGAF00007932473 idat 13.7 MB
EGAF00007932474 idat 13.7 MB
EGAF00007932475 idat 13.7 MB
EGAF00007932476 idat 13.7 MB
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EGAF00007932478 idat 13.7 MB
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EGAF00007932480 idat 13.7 MB
EGAF00007932481 idat 13.7 MB
EGAF00007932482 idat 13.7 MB
EGAF00007932483 idat 13.7 MB
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EGAF00007932486 idat 13.7 MB
EGAF00007932487 idat 13.7 MB
EGAF00007932488 idat 13.7 MB
EGAF00007932489 idat 13.7 MB
EGAF00007932490 idat 13.7 MB
EGAF00007932491 idat 13.7 MB
EGAF00007932492 idat 13.7 MB
EGAF00007932493 idat 13.7 MB
EGAF00007932494 idat 13.7 MB
EGAF00007932495 idat 13.7 MB
EGAF00007932496 idat 13.7 MB
EGAF00007932497 idat 13.7 MB
EGAF00007932498 idat 13.7 MB
EGAF00007932499 idat 13.7 MB
EGAF00007932500 idat 13.7 MB
EGAF00007932501 idat 13.7 MB
EGAF00007932502 idat 13.7 MB
EGAF00007932503 idat 13.7 MB
EGAF00007932504 idat 13.7 MB
EGAF00007932505 idat 13.7 MB
EGAF00007932506 idat 13.7 MB
EGAF00007932507 idat 13.7 MB
EGAF00007932508 idat 13.7 MB
EGAF00007932509 idat 13.7 MB
EGAF00007932510 idat 13.7 MB
EGAF00007932511 idat 13.7 MB
EGAF00007932512 idat 13.7 MB
EGAF00007932513 idat 13.7 MB
EGAF00007932514 idat 13.7 MB
EGAF00007932515 idat 13.7 MB
EGAF00007932516 idat 13.7 MB
EGAF00007932517 idat 13.7 MB
EGAF00007932518 idat 13.7 MB
EGAF00007932519 idat 13.7 MB
EGAF00007932520 idat 13.7 MB
EGAF00007932521 idat 13.7 MB
EGAF00007932522 idat 13.7 MB
EGAF00007932523 idat 13.7 MB
EGAF00007932524 idat 13.7 MB
EGAF00007932525 idat 13.7 MB
EGAF00007932526 idat 13.7 MB
EGAF00007932527 idat 13.7 MB
EGAF00007932528 idat 13.7 MB
EGAF00007932529 idat 13.7 MB
EGAF00007932530 idat 13.7 MB
EGAF00007932531 idat 13.7 MB
EGAF00007932532 idat 13.7 MB
EGAF00007932533 idat 13.7 MB
EGAF00007932534 idat 13.7 MB
EGAF00007932535 idat 13.7 MB
EGAF00007932536 idat 13.7 MB
EGAF00007932537 idat 13.7 MB
EGAF00007932538 idat 13.7 MB
EGAF00007932539 idat 13.7 MB
EGAF00007932540 idat 13.7 MB
EGAF00007932541 idat 13.7 MB
EGAF00007932542 idat 13.7 MB
EGAF00007932543 idat 13.7 MB
EGAF00007932544 idat 13.7 MB
EGAF00007932545 idat 13.7 MB
EGAF00007932546 idat 13.7 MB
EGAF00007932547 idat 13.7 MB
EGAF00007932548 idat 13.7 MB
EGAF00007932549 idat 13.7 MB
EGAF00007932550 idat 13.7 MB
EGAF00007932551 idat 13.7 MB
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EGAF00007932553 idat 13.7 MB
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EGAF00007932555 idat 13.7 MB
EGAF00007932556 idat 13.7 MB
EGAF00007932557 idat 13.7 MB
EGAF00007932558 idat 13.7 MB
EGAF00007932559 idat 13.7 MB
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EGAF00007932562 idat 13.7 MB
EGAF00007932563 idat 13.7 MB
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EGAF00007932565 idat 13.7 MB
EGAF00007932566 idat 13.7 MB
EGAF00007932567 idat 13.7 MB
EGAF00007932568 idat 13.7 MB
EGAF00007932569 idat 13.7 MB
EGAF00007932570 idat 13.7 MB
EGAF00007932571 idat 13.7 MB
EGAF00007932572 idat 13.7 MB
EGAF00007932573 idat 13.7 MB
EGAF00007932574 idat 13.7 MB
EGAF00007932575 idat 13.7 MB
EGAF00007932576 idat 13.7 MB
EGAF00007932577 idat 13.7 MB
EGAF00007932578 idat 13.7 MB
EGAF00007932579 idat 13.7 MB
EGAF00007932580 idat 13.7 MB
EGAF00007932581 idat 13.7 MB
EGAF00007932582 idat 13.7 MB
EGAF00007932583 idat 13.7 MB
EGAF00007932584 idat 13.7 MB
EGAF00007932585 idat 13.7 MB
EGAF00007932586 idat 13.7 MB
EGAF00007932587 idat 13.7 MB
EGAF00007932588 idat 13.7 MB
EGAF00007932589 idat 13.7 MB
EGAF00007932590 idat 13.7 MB
EGAF00007932591 idat 13.7 MB
EGAF00007932592 idat 13.7 MB
EGAF00007932593 idat 13.7 MB
EGAF00007932594 idat 13.7 MB
EGAF00007932595 idat 13.7 MB
EGAF00007932596 idat 13.7 MB
EGAF00007932597 idat 13.7 MB
EGAF00007932598 idat 13.7 MB
EGAF00007932599 idat 13.7 MB
EGAF00007932600 idat 13.7 MB
EGAF00007932601 idat 13.7 MB
EGAF00007932602 idat 13.7 MB
EGAF00007932603 idat 13.7 MB
EGAF00007932604 idat 13.7 MB
EGAF00007932605 idat 13.7 MB
EGAF00007932606 idat 13.7 MB
EGAF00007932607 idat 13.7 MB
EGAF00007932608 idat 13.7 MB
EGAF00007932609 idat 13.7 MB
EGAF00007932610 idat 13.7 MB
EGAF00007932611 idat 13.7 MB
EGAF00007932612 idat 13.7 MB
EGAF00007932613 idat 13.7 MB
EGAF00007932614 idat 13.7 MB
EGAF00007932615 idat 13.7 MB
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EGAF00007932618 idat 13.7 MB
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EGAF00007932620 idat 13.7 MB
EGAF00007932621 idat 13.7 MB
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EGAF00007932623 idat 13.7 MB
EGAF00007932624 idat 13.7 MB
EGAF00007932625 idat 13.7 MB
EGAF00007932626 idat 13.7 MB
EGAF00007932627 idat 13.7 MB
EGAF00007932628 idat 13.7 MB
EGAF00007932629 idat 13.7 MB
EGAF00007932630 idat 13.7 MB
EGAF00007932631 idat 13.7 MB
EGAF00007932632 idat 13.7 MB
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EGAF00007932650 idat 13.7 MB
EGAF00007932651 idat 13.7 MB
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EGAF00007932654 idat 13.7 MB
320 Files (4.4 GB)