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Chordoma_methylation

Chordoma tumors DNA methylation profiling by genome tiling array

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Data Access Committee - Chordoma tissue methylation data

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom MacFeeters-Hamilton Neuro-Oncology Center (MHNOC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: MHNOC and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. MHNOC: MacFeeters-Hamilton Neuro-Oncology Center, 101 College Street, 14th floor, Room 601, M5G1L7, Toronto, Canada 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 11. The User Institution will notify MHNOC within 30 days of any changes or departures of Authorised Personnel. 12. The User Institution will notify MHNOC prior to any significant changes to the protocol for the Project. 13. The User Institution will notify MHNOC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 14. MHNOC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. 15. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than MHNOC. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 16. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 17. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 18. The User Institution understand and agrees that data will be shared after successful establishment of a Data Transfer Agreement between the User Institution(s) and the institution(s) of the Data Producers. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for MHNOC Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY MHNOC intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. MHNOC anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 12 months after these data were first made available on the relevant hosting database, unless MHNOC has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with MHNOC.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006457657 idat 13.7 MB
EGAF00006457658 idat 13.7 MB
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EGAF00006457660 idat 13.7 MB
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EGAF00006457662 idat 13.7 MB
EGAF00006457663 idat 13.7 MB
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EGAF00006457665 idat 13.7 MB
EGAF00006457666 idat 13.7 MB
EGAF00006457667 idat 13.7 MB
EGAF00006457668 idat 13.7 MB
EGAF00006457669 idat 13.7 MB
EGAF00006457670 idat 13.7 MB
EGAF00006457671 idat 13.7 MB
EGAF00006457672 idat 13.7 MB
EGAF00006457673 idat 13.7 MB
EGAF00006457674 idat 13.7 MB
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EGAF00006457676 idat 13.7 MB
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EGAF00006457678 idat 13.7 MB
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EGAF00006457683 idat 13.7 MB
EGAF00006457684 idat 13.7 MB
EGAF00006457685 idat 13.7 MB
EGAF00006457686 idat 13.7 MB
EGAF00006457687 idat 13.7 MB
EGAF00006457688 idat 13.7 MB
EGAF00006457689 idat 13.7 MB
EGAF00006457690 idat 13.7 MB
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EGAF00006457693 idat 13.7 MB
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EGAF00006457695 idat 13.7 MB
EGAF00006457696 idat 13.7 MB
EGAF00006457697 idat 13.7 MB
EGAF00006457698 idat 13.7 MB
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EGAF00006457700 idat 13.7 MB
EGAF00006457701 idat 13.7 MB
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EGAF00006457703 idat 13.7 MB
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EGAF00006457706 idat 13.7 MB
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EGAF00006457711 idat 13.7 MB
EGAF00006457712 idat 13.7 MB
EGAF00006457713 idat 13.7 MB
EGAF00006457714 idat 13.7 MB
EGAF00006457715 idat 13.7 MB
EGAF00006457716 idat 13.7 MB
EGAF00006457717 idat 13.7 MB
EGAF00006457718 idat 13.7 MB
EGAF00006457719 idat 13.7 MB
EGAF00006457720 idat 13.7 MB
EGAF00006457721 idat 13.7 MB
EGAF00006457722 idat 13.7 MB
EGAF00006457723 idat 13.7 MB
EGAF00006457724 idat 13.7 MB
EGAF00006457725 idat 13.7 MB
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EGAF00006457727 idat 13.7 MB
EGAF00006457728 idat 13.7 MB
EGAF00006457729 idat 13.7 MB
EGAF00006457730 idat 13.7 MB
EGAF00006457731 idat 13.7 MB
EGAF00006457732 idat 13.7 MB
EGAF00006457733 idat 13.7 MB
EGAF00006457734 idat 13.7 MB
EGAF00006457735 idat 13.7 MB
EGAF00006457736 idat 13.7 MB
EGAF00006457737 idat 13.7 MB
EGAF00006457738 idat 13.7 MB
EGAF00006457739 idat 13.7 MB
EGAF00006457740 idat 13.7 MB
EGAF00006457741 idat 13.7 MB
EGAF00006457742 idat 13.7 MB
EGAF00006457743 idat 13.7 MB
EGAF00006457744 idat 13.7 MB
EGAF00006457745 idat 13.7 MB
EGAF00006457746 idat 13.7 MB
EGAF00006457747 idat 13.7 MB
EGAF00006457748 idat 13.7 MB
EGAF00006457749 idat 13.7 MB
EGAF00006457750 idat 13.7 MB
EGAF00006457751 idat 13.7 MB
EGAF00006457752 idat 13.7 MB
EGAF00006457753 idat 13.7 MB
EGAF00006457754 idat 13.7 MB
EGAF00006457755 idat 13.7 MB
EGAF00006457756 idat 13.7 MB
EGAF00006457757 idat 13.7 MB
EGAF00006457758 idat 13.7 MB
EGAF00006457759 idat 13.7 MB
EGAF00006457760 idat 13.7 MB
EGAF00006457761 idat 13.7 MB
EGAF00006457762 idat 13.7 MB
EGAF00006457763 idat 13.7 MB
EGAF00006457764 idat 13.7 MB
EGAF00006457765 idat 13.7 MB
EGAF00006457766 idat 13.7 MB
EGAF00006457767 idat 13.7 MB
EGAF00006457768 idat 13.7 MB
EGAF00006457769 idat 13.7 MB
EGAF00006457770 idat 13.7 MB
EGAF00006457771 idat 13.7 MB
EGAF00006457772 idat 13.7 MB
EGAF00006457773 idat 13.7 MB
EGAF00006457774 idat 13.7 MB
EGAF00006457775 idat 13.7 MB
EGAF00006457776 idat 13.7 MB
EGAF00006457777 idat 13.7 MB
EGAF00006457778 idat 13.7 MB
EGAF00006457779 idat 13.7 MB
EGAF00006457780 idat 13.7 MB
EGAF00006457781 idat 13.7 MB
EGAF00006457782 idat 13.7 MB
EGAF00006457783 idat 13.7 MB
EGAF00006457784 idat 13.7 MB
EGAF00006457785 idat 13.7 MB
EGAF00006457786 idat 13.7 MB
EGAF00006457787 idat 13.7 MB
EGAF00006457788 idat 13.7 MB
EGAF00006457789 idat 13.7 MB
EGAF00006457790 idat 13.7 MB
EGAF00006457791 idat 13.7 MB
EGAF00006457792 idat 13.7 MB
136 Files (1.9 GB)