imputed_bacterial_meningitis
This study includes 1146 samples of host genotyping data (imputed) from Illumina Omni arrays, using https://imputation.sanger.ac.uk/ with the Haplotype Reference Consortium v1.1. Samples were collected from adults (>16 yrs) patients with CSF confirmed bacterial meningitis in the Netherlands between 2006 and 2015. Metadata includes patient outcome, species of bacteria, and for 467 samples a link to an ENA run with the associated bacterial genome (S. pneumoniae only).
- 05/07/2022
- 1149 samples
- DAC: EGAC00001002513
- Technology: Illumina Human Omni1-Quad beadchip.
- PUB DUO:0000019 (version: 2021-02-23)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
- COL DUO:0000020 (version: 2021-02-23)collaboration requiredThis data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
Request approval of access to MeninGene biobank via committee at UMC Amsterdam
The European Meningitis Biobank (MeninGene Biobank) contains data and samples of adult patients with bacterial meningitis participating in the MeninGene study. To guarantee the privacy of patients, data in this database is stored in a anonymized fashion (for example without date of birth). The MeninGene Biobank is made public for al European bacterial meningitis researchers and requests can be submitted via the application form below. Requests for data out of the MeninGene Biobank are examined by a committee consisting of: Prof. Dr. D. van de Beek – Neurologist, principal investigator Dr. A. van der Ende – Head of Dutch Reference Laboratory for Bacterial Meningitis Prof. Dr. F. Baas – Head of AMC genome analysis department Prof. Dr. A.H. Zwinderman - Statistician, Department of Clinical Epidemiology, Bioinformatica en Biostatistiek (KEBB), AMC Prof. Dr. S.L. Leib, Institute for Infectious Diseases, Bern, Swiss – President of the Meningitis study group of the European Society of Clinical Microbiology (ESCMID), president of the Swiss Society for Infectious Diseases. Requests will be approved after a favourable decision of the medical ethical committee. To be able to process the request a preproposal can be submitted through this website with at least the following information: research institute, the research question, expected results, how the expected results will be published, how data will be stored and what computer security systems are in place at the research institute to guarantee data safety. The permission to transfer data between the MeninGene Biobank and the applicant will be confirmed in a contract. If the results of the research project are not published in a peer-reviewed medical scientific magazine, they will have to be published in the MeninGene Biobank database (before maximal one year after accomplishment of the research project). Furthermore, all projects will be announced on our website. As this project is funded by the European Research Council (ERC) , a medical ethical committee has been established to evaluate the ethical aspects of the MeninGene Biobank on an annual basis. This committee will rapport directly to the ERC on all research performed with the data from this project. Members are: Prof. R.C. Hennekam, Head Ethical Committee, Pediatrician and Clinical Geneticist, member of the Medical Ethical Committee Academic Medical center. Mr. Dr. M.C. Ploem, Legal Expert, Department of Public Health, member of the Medical Ethical Committee Academic Medical center. Drs. A. Cahn, Chief Technology Officer, Hippo, Amsterdam, member Apache Software Foundation; W. Witkamp, President of Dutch Meningitis Foundation, representative of patients’ interests
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00006269691 | 1656498621106 | 151.4 MB | ||
EGAF00006269692 | 1656498621106 | 91.3 MB | ||
EGAF00006269694 | 1656498621106 | 72.0 MB | ||
EGAF00006269695 | 1656498621106 | 90.1 MB | ||
EGAF00006269696 | 1656498621106 | 182.2 MB | ||
EGAF00006269697 | 1656498621106 | 219.5 MB | ||
EGAF00006269698 | 1656498621106 | 154.3 MB | ||
EGAF00006269699 | 1656498621106 | 45.2 MB | ||
EGAF00006269700 | 1656498621106 | 58.1 kB | ||
EGAF00006269701 | 1656498621106 | 235.8 MB | ||
EGAF00006269702 | 1656498621106 | 256.0 MB | ||
EGAF00006269704 | 1656498621106 | 112.7 MB | ||
EGAF00006269705 | 1656498621106 | 199.2 MB | ||
EGAF00006269706 | 1656498621106 | 197.2 MB | ||
EGAF00006269707 | 1656498621106 | 78.0 MB | ||
EGAF00006269708 | 1656498621106 | 147.1 MB | ||
EGAF00006269709 | 1656498621106 | 102.3 MB | ||
EGAF00006269710 | 1656498621106 | 224.5 MB | ||
EGAF00006269711 | 1656498621106 | 99.9 MB | ||
EGAF00006269712 | 1656498621106 | 88.2 MB | ||
EGAF00006269713 | 1656498621106 | 169.5 MB | ||
EGAF00006269714 | 1656498621106 | 133.4 MB | ||
EGAF00006269715 | 1656498621106 | 69.9 MB | ||
23 Files (3.1 GB) |