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SNP array karyotyping of upper urinary tract urothelial carcinoma

Genome-wide copy number analysis of upper urinary tract urothelial carcinoma using GeneChip Human Mapping 250K Nspl

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Integrated genetic analysis of upper urinary tract urothelial carcinoma

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Kyoto University grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Kyoto University and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Kyoto University: Department of Pathology and Tumor Biology, Kyoto University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Kyoto University within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Kyoto University prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Kyoto University as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Kyoto University may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004979 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005199037 CEL 65.7 MB
EGAF00005199038 CEL 65.7 MB
EGAF00005199039 CEL 65.7 MB
EGAF00005199040 CEL 65.7 MB
EGAF00005199041 CEL 65.7 MB
EGAF00005199042 CEL 65.7 MB
EGAF00005199043 CEL 65.7 MB
EGAF00005199044 CEL 65.7 MB
EGAF00005199045 CEL 65.7 MB
EGAF00005199046 CEL 65.7 MB
EGAF00005199047 CEL 65.7 MB
EGAF00005199048 CEL 65.7 MB
EGAF00005199049 CEL 65.7 MB
EGAF00005199050 CEL 65.7 MB
EGAF00005199051 CEL 65.7 MB
EGAF00005199052 CEL 65.7 MB
EGAF00005199053 CEL 65.7 MB
EGAF00005199054 CEL 65.7 MB
EGAF00005199055 CEL 65.7 MB
EGAF00005199056 CEL 65.7 MB
EGAF00005199057 CEL 65.7 MB
EGAF00005199058 CEL 65.7 MB
EGAF00005199059 CEL 65.7 MB
EGAF00005199060 CEL 65.7 MB
EGAF00005199061 CEL 65.7 MB
EGAF00005199062 CEL 65.7 MB
EGAF00005199063 CEL 65.7 MB
EGAF00005199064 CEL 65.7 MB
EGAF00005199065 CEL 65.7 MB
EGAF00005199066 CEL 65.7 MB
EGAF00005199067 CEL 65.7 MB
EGAF00005199068 CEL 65.7 MB
EGAF00005199069 CEL 65.7 MB
EGAF00005199070 CEL 65.7 MB
EGAF00005199071 CEL 65.7 MB
EGAF00005199072 CEL 65.7 MB
EGAF00005199073 CEL 65.7 MB
EGAF00005199074 CEL 65.7 MB
EGAF00005199075 CEL 65.7 MB
EGAF00005199076 CEL 65.7 MB
EGAF00005199077 CEL 65.7 MB
EGAF00005199078 CEL 65.7 MB
EGAF00005199079 CEL 65.7 MB
EGAF00005199080 CEL 65.7 MB
EGAF00005199081 CEL 65.7 MB
EGAF00005199082 CEL 65.7 MB
EGAF00005199083 CEL 65.7 MB
EGAF00005199084 CEL 65.7 MB
EGAF00005199085 CEL 65.7 MB
EGAF00005199086 CEL 65.7 MB
EGAF00005199087 CEL 65.7 MB
EGAF00005199088 CEL 65.7 MB
EGAF00005199089 CEL 65.7 MB
EGAF00005199090 CEL 65.7 MB
EGAF00005199091 CEL 65.7 MB
EGAF00005199092 CEL 65.7 MB
EGAF00005199093 CEL 65.7 MB
EGAF00005199094 CEL 65.7 MB
EGAF00005199095 CEL 65.7 MB
EGAF00005199096 CEL 65.7 MB
EGAF00005199097 CEL 65.7 MB
EGAF00005199098 CEL 65.7 MB
EGAF00005199099 CEL 65.7 MB
EGAF00005199100 CEL 65.7 MB
EGAF00005199101 CEL 65.7 MB
EGAF00005199102 CEL 65.7 MB
EGAF00005199103 CEL 65.7 MB
EGAF00005199104 CEL 65.7 MB
EGAF00005199105 CEL 65.7 MB
EGAF00005199106 CEL 65.7 MB
EGAF00005199107 CEL 65.7 MB
EGAF00005199108 CEL 65.7 MB
EGAF00005199109 CEL 65.7 MB
EGAF00005199110 CEL 65.7 MB
EGAF00005199111 CEL 65.7 MB
EGAF00005199112 CEL 65.7 MB
EGAF00005199113 CEL 65.7 MB
EGAF00005199114 CEL 65.7 MB
EGAF00005199115 CEL 65.7 MB
EGAF00005199116 CEL 65.7 MB
EGAF00005199117 CEL 65.7 MB
EGAF00005199118 CEL 65.7 MB
EGAF00005199119 CEL 65.7 MB
EGAF00005199120 CEL 65.7 MB
EGAF00005199121 CEL 65.7 MB
EGAF00005199122 CEL 65.7 MB
EGAF00005199123 CEL 65.7 MB
EGAF00005199124 CEL 65.7 MB
EGAF00005199125 CEL 65.7 MB
EGAF00005199126 CEL 65.7 MB
EGAF00005199127 CEL 65.7 MB
EGAF00005199128 CEL 65.7 MB
EGAF00005199129 CEL 65.7 MB
EGAF00005199130 CEL 65.7 MB
EGAF00005199131 CEL 65.7 MB
EGAF00005199132 CEL 65.7 MB
EGAF00005199133 CEL 65.7 MB
EGAF00005199134 CEL 65.7 MB
EGAF00005199135 CEL 65.7 MB
EGAF00005199136 CEL 65.7 MB
EGAF00005199137 CEL 65.7 MB
EGAF00005199138 CEL 65.7 MB
EGAF00005199139 CEL 65.7 MB
EGAF00005199140 CEL 65.7 MB
EGAF00005199141 CEL 65.7 MB
EGAF00005199142 CEL 65.7 MB
EGAF00005199143 CEL 65.7 MB
EGAF00005199144 CEL 65.7 MB
EGAF00005199145 CEL 65.7 MB
EGAF00005199146 CEL 65.7 MB
EGAF00005199147 CEL 65.7 MB
EGAF00005199148 CEL 65.7 MB
EGAF00005199149 CEL 65.7 MB
EGAF00005199150 CEL 65.7 MB
EGAF00005199151 CEL 65.7 MB
EGAF00005199152 CEL 65.7 MB
EGAF00005199153 CEL 65.7 MB
EGAF00005199154 CEL 65.7 MB
EGAF00005199155 CEL 65.7 MB
EGAF00005199156 CEL 65.7 MB
EGAF00005199157 CEL 65.7 MB
EGAF00005199158 CEL 65.7 MB
EGAF00005199159 CEL 65.7 MB
EGAF00005199160 CEL 65.7 MB
EGAF00005199161 CEL 65.7 MB
EGAF00005199162 CEL 65.7 MB
EGAF00005199163 CEL 65.7 MB
EGAF00005199164 CEL 65.7 MB
EGAF00005199165 CEL 65.7 MB
EGAF00005199166 CEL 65.7 MB
EGAF00005199167 CEL 65.7 MB
EGAF00005199168 CEL 65.7 MB
EGAF00005199169 CEL 65.7 MB
EGAF00005199170 CEL 65.7 MB
EGAF00005199171 CEL 65.7 MB
EGAF00005199172 CEL 65.7 MB
EGAF00005199173 CEL 65.7 MB
EGAF00005199174 CEL 65.7 MB
EGAF00005199175 CEL 65.7 MB
EGAF00005199176 CEL 65.7 MB
EGAF00005199177 CEL 65.7 MB
EGAF00005199178 CEL 65.7 MB
EGAF00005199179 CEL 65.7 MB
EGAF00005199180 CEL 65.7 MB
EGAF00005199181 CEL 65.7 MB
EGAF00005199182 CEL 65.7 MB
EGAF00005199183 CEL 65.7 MB
EGAF00005199184 CEL 65.7 MB
EGAF00005199185 CEL 65.7 MB
EGAF00005199186 CEL 65.7 MB
EGAF00005199187 CEL 65.7 MB
EGAF00005199188 CEL 65.7 MB
EGAF00005199189 CEL 65.7 MB
EGAF00005199190 CEL 65.7 MB
EGAF00005199191 CEL 65.7 MB
EGAF00005199192 CEL 65.7 MB
EGAF00005199193 CEL 65.7 MB
EGAF00005199194 CEL 65.7 MB
EGAF00005199195 CEL 65.7 MB
EGAF00005199196 CEL 65.7 MB
EGAF00005199197 CEL 65.7 MB
EGAF00005199198 CEL 65.7 MB
EGAF00005199199 CEL 65.7 MB
EGAF00005199200 CEL 65.7 MB
EGAF00005199201 CEL 65.7 MB
EGAF00005199202 CEL 65.7 MB
EGAF00005199203 CEL 65.7 MB
EGAF00005199204 CEL 65.7 MB
EGAF00005199205 CEL 65.7 MB
EGAF00005199206 CEL 65.7 MB
EGAF00005199207 CEL 65.7 MB
EGAF00005199208 CEL 65.7 MB
EGAF00005199209 CEL 65.7 MB
EGAF00005199210 CEL 65.7 MB
EGAF00005199211 CEL 65.7 MB
EGAF00005199212 CEL 65.7 MB
EGAF00005199213 CEL 65.7 MB
EGAF00005199214 CEL 65.7 MB
EGAF00005199215 CEL 65.7 MB
EGAF00005199216 CEL 65.7 MB
EGAF00005199217 CEL 65.7 MB
EGAF00005199218 CEL 65.7 MB
EGAF00005199219 CEL 65.7 MB
EGAF00005199220 CEL 65.7 MB
EGAF00005199221 CEL 65.7 MB
EGAF00005199222 CEL 65.7 MB
EGAF00005199223 CEL 65.7 MB
EGAF00005199224 CEL 65.7 MB
EGAF00005199225 CEL 65.7 MB
EGAF00005199226 CEL 65.7 MB
EGAF00005199227 CEL 65.7 MB
EGAF00005199228 CEL 65.7 MB
EGAF00005199229 CEL 65.7 MB
EGAF00005199230 CEL 65.7 MB
EGAF00005199231 CEL 65.7 MB
EGAF00005199232 CEL 65.7 MB
EGAF00005199233 CEL 65.7 MB
EGAF00005199234 CEL 65.7 MB
EGAF00005199235 CEL 65.7 MB
EGAF00005199236 CEL 65.7 MB
EGAF00005199237 CEL 65.7 MB
EGAF00005199238 CEL 65.7 MB
EGAF00005199239 CEL 65.7 MB
EGAF00005199240 CEL 65.7 MB
EGAF00005199241 CEL 65.7 MB
205 Files (13.5 GB)