CCA RNA-seq data (60 CCA, 6 normal, 16 cell-line)
Fastq files for RNA-seq for 60 CCAs, 6 normal bile duct tissues, 14 CCA cell-lines (including replicates), and 2 normal cholangiocyte cell-lines (including replicates). RNA was extracted using the Qiagen RNeasy Mini kit. Illumina Tru-Seq Stranded Total RNA kit (Illumina, San Diego, California, USA) was used to prepare RNA libraries from 1 µg of total RNA. Paired-end 150 bp sequencing was performed using Illumina HiSeq4000 sequencer with the paired-end 150 bp read option.
- 82 samples
- DAC: EGAC00001003452
- Technology: Illumina HiSeq 4000
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- COL DUO:0000020 (version: 2021-02-23)collaboration requiredThis data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).
- IRB DUO:0000021 (version: 2021-02-23)ethics approval requiredThis data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- NPOA DUO:0000044 (version: 2021-02-23)population origins or ancestry research prohibitedThis data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.
- NPU DUO:0000045 (version: 2021-02-23)not for profit organisation use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations.
- NCU DUO:0000046 (version: 2021-02-23)non-commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit use.
Enhancer studies on CCA
DUO:0000006 health/medical/biomedical research and clinical care This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry. DUO:0000020 collaboration required This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s). DUO:0000021 ethics approval required This requirement indicates that the requestor must provide documentation of local IRB/ERB approval. DUO:0000018 not-for-profit use only This requirement indicates that use is limited to not-for-profit organizations. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited. DUO:0000045 not for profit organisation use only This data use modifier indicates that use of the data is limited to not-for-profit organizations. DUO:0000046 non-commercial use only This data use modifier indicates that use of the data is limited to not-for-profit use. DUO:0000027 project-specific restriction This requirement indicates that use is limited to use within an approved project. DUO:0000044 population origins or ancestry research prohibited This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007309 | Epigenetics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008264366 | fastq.gz | 2.9 GB | ||
| EGAF00008264367 | fastq.gz | 3.1 GB | ||
| EGAF00008264368 | fastq.gz | 3.2 GB | ||
| EGAF00008264369 | fastq.gz | 3.5 GB | ||
| EGAF00008264370 | fastq.gz | 2.3 GB | ||
| EGAF00008264371 | fastq.gz | 2.4 GB | ||
| EGAF00008264372 | fastq.gz | 3.5 GB | ||
| EGAF00008264373 | fastq.gz | 3.8 GB | ||
| EGAF00008264374 | fastq.gz | 3.4 GB | ||
| EGAF00008264375 | fastq.gz | 3.6 GB | ||
| EGAF00008264376 | fastq.gz | 3.4 GB | ||
| EGAF00008264377 | fastq.gz | 3.5 GB | ||
| EGAF00008264378 | fastq.gz | 3.1 GB | ||
| EGAF00008264379 | fastq.gz | 3.4 GB | ||
| EGAF00008264380 | fastq.gz | 2.9 GB | ||
| EGAF00008264381 | fastq.gz | 3.2 GB | ||
| EGAF00008264382 | fastq.gz | 2.4 GB | ||
| EGAF00008264383 | fastq.gz | 2.7 GB | ||
| EGAF00008264384 | fastq.gz | 2.9 GB | ||
| EGAF00008264385 | fastq.gz | 3.1 GB | ||
| EGAF00008264386 | fastq.gz | 3.2 GB | ||
| EGAF00008264387 | fastq.gz | 3.4 GB | ||
| EGAF00008264388 | fastq.gz | 3.2 GB | ||
| EGAF00008264389 | fastq.gz | 3.3 GB | ||
| EGAF00008264390 | fastq.gz | 4.1 GB | ||
| EGAF00008264391 | fastq.gz | 4.4 GB | ||
| EGAF00008264392 | fastq.gz | 3.1 GB | ||
| EGAF00008264393 | fastq.gz | 3.4 GB | ||
| EGAF00008264394 | fastq.gz | 3.1 GB | ||
| EGAF00008264395 | fastq.gz | 3.4 GB | ||
| EGAF00008264396 | fastq.gz | 2.9 GB | ||
| EGAF00008264397 | fastq.gz | 2.9 GB | ||
| EGAF00008264398 | fastq.gz | 3.6 GB | ||
| EGAF00008264399 | fastq.gz | 3.9 GB | ||
| EGAF00008264400 | fastq.gz | 2.9 GB | ||
| EGAF00008264401 | fastq.gz | 3.1 GB | ||
| EGAF00008264402 | fastq.gz | 3.0 GB | ||
| EGAF00008264403 | fastq.gz | 3.2 GB | ||
| EGAF00008264404 | fastq.gz | 2.9 GB | ||
| EGAF00008264405 | fastq.gz | 3.1 GB | ||
| EGAF00008264406 | fastq.gz | 2.3 GB | ||
| EGAF00008264407 | fastq.gz | 2.5 GB | ||
| EGAF00008264408 | fastq.gz | 2.9 GB | ||
| EGAF00008264409 | fastq.gz | 3.2 GB | ||
| EGAF00008264410 | fastq.gz | 3.8 GB | ||
| EGAF00008264411 | fastq.gz | 3.9 GB | ||
| EGAF00008264412 | fastq.gz | 3.6 GB | ||
| EGAF00008264413 | fastq.gz | 3.7 GB | ||
| EGAF00008264414 | fastq.gz | 3.0 GB | ||
| EGAF00008264415 | fastq.gz | 3.2 GB | ||
| EGAF00008264416 | fastq.gz | 3.7 GB | ||
| EGAF00008264417 | fastq.gz | 3.8 GB | ||
| EGAF00008264418 | fastq.gz | 3.3 GB | ||
| EGAF00008264419 | fastq.gz | 3.4 GB | ||
| EGAF00008264420 | fastq.gz | 3.2 GB | ||
| EGAF00008264421 | fastq.gz | 3.4 GB | ||
| EGAF00008264422 | fastq.gz | 3.4 GB | ||
| EGAF00008264423 | fastq.gz | 3.7 GB | ||
| EGAF00008264424 | fastq.gz | 2.9 GB | ||
| EGAF00008264425 | fastq.gz | 3.2 GB | ||
| EGAF00008264426 | fastq.gz | 2.8 GB | ||
| EGAF00008264427 | fastq.gz | 3.0 GB | ||
| EGAF00008264428 | fastq.gz | 2.9 GB | ||
| EGAF00008264429 | fastq.gz | 3.0 GB | ||
| EGAF00008264430 | fastq.gz | 3.1 GB | ||
| EGAF00008264431 | fastq.gz | 3.3 GB | ||
| EGAF00008264432 | fastq.gz | 3.6 GB | ||
| EGAF00008264433 | fastq.gz | 3.9 GB | ||
| EGAF00008264434 | fastq.gz | 3.0 GB | ||
| EGAF00008264435 | fastq.gz | 3.2 GB | ||
| EGAF00008264436 | fastq.gz | 2.8 GB | ||
| EGAF00008264437 | fastq.gz | 3.0 GB | ||
| EGAF00008264438 | fastq.gz | 2.9 GB | ||
| EGAF00008264439 | fastq.gz | 3.2 GB | ||
| EGAF00008264440 | fastq.gz | 3.3 GB | ||
| EGAF00008264441 | fastq.gz | 3.6 GB | ||
| EGAF00008264442 | fastq.gz | 3.1 GB | ||
| EGAF00008264443 | fastq.gz | 3.4 GB | ||
| EGAF00008264444 | fastq.gz | 3.2 GB | ||
| EGAF00008264445 | fastq.gz | 3.4 GB | ||
| EGAF00008264446 | fastq.gz | 2.9 GB | ||
| EGAF00008264447 | fastq.gz | 3.0 GB | ||
| EGAF00008264448 | fastq.gz | 3.1 GB | ||
| EGAF00008264449 | fastq.gz | 3.1 GB | ||
| EGAF00008264450 | fastq.gz | 2.9 GB | ||
| EGAF00008264451 | fastq.gz | 3.2 GB | ||
| EGAF00008264452 | fastq.gz | 2.7 GB | ||
| EGAF00008264453 | fastq.gz | 3.0 GB | ||
| EGAF00008264454 | fastq.gz | 2.9 GB | ||
| EGAF00008264455 | fastq.gz | 3.1 GB | ||
| EGAF00008264456 | fastq.gz | 2.8 GB | ||
| EGAF00008264457 | fastq.gz | 3.1 GB | ||
| EGAF00008264458 | fastq.gz | 2.8 GB | ||
| EGAF00008264459 | fastq.gz | 3.1 GB | ||
| EGAF00008264460 | fastq.gz | 2.7 GB | ||
| EGAF00008264461 | fastq.gz | 3.0 GB | ||
| EGAF00008264462 | fastq.gz | 3.0 GB | ||
| EGAF00008264463 | fastq.gz | 3.3 GB | ||
| EGAF00008264464 | fastq.gz | 2.9 GB | ||
| EGAF00008264465 | fastq.gz | 3.2 GB | ||
| EGAF00008264466 | fastq.gz | 2.7 GB | ||
| EGAF00008264467 | fastq.gz | 3.0 GB | ||
| EGAF00008264468 | fastq.gz | 3.5 GB | ||
| EGAF00008264469 | fastq.gz | 3.6 GB | ||
| EGAF00008264470 | fastq.gz | 3.0 GB | ||
| EGAF00008264471 | fastq.gz | 3.3 GB | ||
| EGAF00008264472 | fastq.gz | 2.9 GB | ||
| EGAF00008264473 | fastq.gz | 3.1 GB | ||
| EGAF00008264474 | fastq.gz | 2.8 GB | ||
| EGAF00008264475 | fastq.gz | 3.0 GB | ||
| EGAF00008264476 | fastq.gz | 3.3 GB | ||
| EGAF00008264477 | fastq.gz | 3.5 GB | ||
| EGAF00008264478 | fastq.gz | 3.6 GB | ||
| EGAF00008264479 | fastq.gz | 3.7 GB | ||
| EGAF00008264480 | fastq.gz | 3.4 GB | ||
| EGAF00008264481 | fastq.gz | 3.5 GB | ||
| EGAF00008264482 | fastq.gz | 2.8 GB | ||
| EGAF00008264483 | fastq.gz | 2.9 GB | ||
| EGAF00008264484 | fastq.gz | 3.4 GB | ||
| EGAF00008264485 | fastq.gz | 3.7 GB | ||
| EGAF00008264486 | fastq.gz | 2.6 GB | ||
| EGAF00008264487 | fastq.gz | 2.7 GB | ||
| EGAF00008264488 | fastq.gz | 3.6 GB | ||
| EGAF00008264489 | fastq.gz | 3.9 GB | ||
| EGAF00008264490 | fastq.gz | 2.9 GB | ||
| EGAF00008264491 | fastq.gz | 3.1 GB | ||
| EGAF00008264492 | fastq.gz | 3.0 GB | ||
| EGAF00008264493 | fastq.gz | 3.3 GB | ||
| EGAF00008264494 | fastq.gz | 2.9 GB | ||
| EGAF00008264495 | fastq.gz | 3.2 GB | ||
| EGAF00008264496 | fastq.gz | 3.0 GB | ||
| EGAF00008264497 | fastq.gz | 3.2 GB | ||
| EGAF00008264498 | fastq.gz | 3.4 GB | ||
| EGAF00008264499 | fastq.gz | 3.5 GB | ||
| EGAF00008264500 | fastq.gz | 3.5 GB | ||
| EGAF00008264501 | fastq.gz | 3.8 GB | ||
| EGAF00008264502 | fastq.gz | 6.8 GB | ||
| EGAF00008264503 | fastq.gz | 7.6 GB | ||
| EGAF00008264504 | fastq.gz | 6.5 GB | ||
| EGAF00008264505 | fastq.gz | 7.1 GB | ||
| EGAF00008264506 | fastq.gz | 7.7 GB | ||
| EGAF00008264507 | fastq.gz | 8.6 GB | ||
| EGAF00008264508 | fastq.gz | 8.9 GB | ||
| EGAF00008264509 | fastq.gz | 9.8 GB | ||
| EGAF00008264510 | fastq.gz | 2.7 GB | ||
| EGAF00008264511 | fastq.gz | 3.0 GB | ||
| EGAF00008264512 | fastq.gz | 3.4 GB | ||
| EGAF00008264513 | fastq.gz | 3.5 GB | ||
| EGAF00008264514 | fastq.gz | 3.1 GB | ||
| EGAF00008264515 | fastq.gz | 3.2 GB | ||
| EGAF00008264516 | fastq.gz | 3.2 GB | ||
| EGAF00008264517 | fastq.gz | 3.5 GB | ||
| EGAF00008264518 | fastq.gz | 2.8 GB | ||
| EGAF00008264519 | fastq.gz | 2.9 GB | ||
| EGAF00008264520 | fastq.gz | 2.8 GB | ||
| EGAF00008264521 | fastq.gz | 2.8 GB | ||
| EGAF00008264522 | fastq.gz | 3.0 GB | ||
| EGAF00008264523 | fastq.gz | 3.0 GB | ||
| EGAF00008264524 | fastq.gz | 2.7 GB | ||
| EGAF00008264525 | fastq.gz | 2.7 GB | ||
| EGAF00008264526 | fastq.gz | 3.0 GB | ||
| EGAF00008264527 | fastq.gz | 3.0 GB | ||
| EGAF00008264528 | fastq.gz | 3.4 GB | ||
| EGAF00008264529 | fastq.gz | 3.5 GB | ||
| 164 Files (558.8 GB) | ||||