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Shallow-whole genome sequencing for copy numbers in resectable gastric cancer treated with surgery alone

Shallow-whole genome sequencing for copy numbers in resectable gastric cancer treated with surgery alone

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007394 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008263479 bam 688.6 MB
EGAF00008263480 bam 540.3 MB
EGAF00008263481 bam 580.4 MB
EGAF00008263482 bam 757.8 MB
EGAF00008263483 bam 617.1 MB
EGAF00008263484 bam 725.4 MB
EGAF00008263485 bam 710.9 MB
EGAF00008263486 bam 477.1 MB
EGAF00008263487 bam 429.0 MB
EGAF00008263488 bam 571.1 MB
EGAF00008263489 bam 722.2 MB
EGAF00008263490 bam 668.0 MB
EGAF00008263491 bam 499.0 MB
EGAF00008263492 bam 803.5 MB
EGAF00008263493 bam 433.1 MB
EGAF00008263494 bam 440.4 MB
EGAF00008263495 bam 499.8 MB
EGAF00008263496 bam 437.4 MB
EGAF00008263497 bam 569.3 MB
EGAF00008263498 bam 599.0 MB
EGAF00008263499 bam 512.2 MB
EGAF00008263500 bam 265.3 MB
EGAF00008263502 bam 742.3 MB
EGAF00008263503 bam 628.0 MB
EGAF00008263504 bam 674.5 MB
EGAF00008263505 bam 468.4 MB
EGAF00008263506 bam 478.8 MB
EGAF00008263508 bam 288.3 MB
EGAF00008263509 bam 304.1 MB
EGAF00008263510 bam 576.6 MB
EGAF00008263511 bam 715.7 MB
EGAF00008263512 bam 537.6 MB
EGAF00008263513 bam 563.1 MB
EGAF00008263514 bam 599.1 MB
EGAF00008263515 bam 443.7 MB
EGAF00008263517 bam 719.5 MB
EGAF00008263518 bam 516.9 MB
EGAF00008263519 bam 519.8 MB
EGAF00008263521 bam 518.4 MB
EGAF00008263522 bam 573.0 MB
EGAF00008263523 bam 651.5 MB
EGAF00008263524 bam 699.3 MB
EGAF00008263525 bam 187.4 MB
EGAF00008263526 bam 821.6 MB
EGAF00008263527 bam 327.6 MB
EGAF00008263528 bam 581.9 MB
EGAF00008263529 bam 346.3 MB
EGAF00008263530 bam 341.6 MB
EGAF00008263532 bam 830.4 MB
EGAF00008263533 bam 545.2 MB
EGAF00008263534 bam 575.7 MB
EGAF00008263537 bam 575.6 MB
EGAF00008263538 bam 407.1 MB
EGAF00008263539 bam 831.5 MB
EGAF00008263540 bam 534.0 MB
EGAF00008263541 bam 511.2 MB
EGAF00008263543 bam 440.4 MB
EGAF00008263544 bam 323.1 MB
EGAF00008263545 bam 655.3 MB
EGAF00008263546 bam 269.6 MB
EGAF00008263547 bam 402.3 MB
EGAF00008263548 bam 785.4 MB
EGAF00008263549 bam 376.0 MB
EGAF00008263550 bam 507.4 MB
EGAF00008263551 bam 245.5 MB
EGAF00008263552 bam 557.6 MB
EGAF00008263553 bam 472.8 MB
EGAF00008263554 bam 643.0 MB
EGAF00008263555 bam 677.6 MB
EGAF00008263557 bam 622.3 MB
EGAF00008263558 bam 437.9 MB
EGAF00008263559 bam 653.7 MB
EGAF00008263561 bam 499.0 MB
EGAF00008263562 bam 617.9 MB
EGAF00008263563 bam 791.6 MB
EGAF00008263564 bam 554.5 MB
EGAF00008263565 bam 856.5 MB
EGAF00008263566 bam 745.5 MB
EGAF00008263567 bam 760.0 MB
EGAF00008263568 bam 591.9 MB
EGAF00008263569 bam 463.4 MB
EGAF00008263570 bam 461.1 MB
EGAF00008263571 bam 489.4 MB
EGAF00008263572 bam 518.1 MB
EGAF00008263573 bam 516.0 MB
EGAF00008263577 bam 285.7 MB
EGAF00008263578 bam 568.0 MB
EGAF00008263579 bam 364.8 MB
EGAF00008263580 bam 670.1 MB
EGAF00008263581 bam 455.7 MB
EGAF00008263582 bam 396.8 MB
EGAF00008263583 bam 446.3 MB
EGAF00008263584 bam 813.7 MB
EGAF00008263585 bam 610.7 MB
EGAF00008263586 bam 624.1 MB
EGAF00008263587 bam 403.7 MB
EGAF00008263588 bam 968.2 MB
EGAF00008263589 bam 682.4 MB
EGAF00008263590 bam 648.4 MB
EGAF00008263591 bam 705.8 MB
EGAF00008263592 bam 536.6 MB
EGAF00008263593 bam 453.4 MB
EGAF00008263594 bam 428.4 MB
EGAF00008263595 bam 364.0 MB
EGAF00008263596 bam 675.6 MB
EGAF00008263597 bam 667.7 MB
EGAF00008263598 bam 784.7 MB
EGAF00008263599 bam 612.5 MB
EGAF00008263600 bam 594.1 MB
EGAF00008263601 bam 278.1 MB
EGAF00008263602 bam 389.8 MB
EGAF00008263604 bam 580.2 MB
EGAF00008263605 bam 231.9 MB
EGAF00008263606 bam 561.9 MB
EGAF00008263607 bam 439.2 MB
EGAF00008263608 bam 784.3 MB
EGAF00008263609 bam 955.1 MB
EGAF00008263610 bam 552.7 MB
EGAF00008263611 bam 790.5 MB
EGAF00008263612 bam 743.6 MB
EGAF00008263613 bam 516.8 MB
EGAF00008263614 bam 548.3 MB
EGAF00008263615 bam 494.1 MB
EGAF00008263616 bam 605.2 MB
EGAF00008263617 bam 622.4 MB
EGAF00008263619 bam 652.0 MB
EGAF00008263620 bam 418.9 MB
EGAF00008263621 bam 701.4 MB
EGAF00008263622 bam 602.1 MB
EGAF00008263624 bam 644.9 MB
EGAF00008263625 bam 592.3 MB
EGAF00008263626 bam 612.5 MB
EGAF00008263629 bam 719.1 MB
EGAF00008263631 bam 373.2 MB
EGAF00008263632 bam 465.3 MB
EGAF00008263633 bam 570.9 MB
EGAF00008263634 bam 722.9 MB
EGAF00008263635 bam 278.8 MB
EGAF00008263636 bam 997.1 MB
EGAF00008263637 bam 573.8 MB
EGAF00008263638 bam 302.8 MB
EGAF00008263640 bam 548.2 MB
EGAF00008263641 bam 716.6 MB
EGAF00008263642 bam 485.8 MB
EGAF00008263643 bam 324.5 MB
EGAF00008263644 bam 547.6 MB
EGAF00008263645 bam 497.4 MB
EGAF00008263646 bam 345.5 MB
EGAF00008263647 bam 1.2 GB
EGAF00008263648 bam 573.9 MB
EGAF00008263649 bam 454.4 MB
EGAF00008263650 bam 456.0 MB
EGAF00008263651 bam 387.7 MB
EGAF00008263652 bam 444.5 MB
EGAF00008263653 bam 527.8 MB
EGAF00008263654 bam 601.8 MB
EGAF00008263655 bam 907.5 MB
EGAF00008263656 bam 646.2 MB
EGAF00008263657 bam 682.5 MB
EGAF00008263660 bam 475.6 MB
EGAF00008263661 bam 508.3 MB
EGAF00008263662 bam 542.4 MB
EGAF00008263663 bam 598.6 MB
EGAF00008263664 bam 317.5 MB
EGAF00008263665 bam 463.2 MB
EGAF00008263666 bam 853.9 MB
EGAF00008263667 bam 531.8 MB
EGAF00008263668 bam 515.2 MB
EGAF00008263669 bam 742.4 MB
EGAF00008263670 bam 672.1 MB
EGAF00008263671 bam 737.9 MB
EGAF00008263672 bam 778.7 MB
EGAF00008263673 bam 684.8 MB
EGAF00008263674 bam 388.0 MB
EGAF00008263675 bam 389.6 MB
EGAF00008263676 bam 362.2 MB
EGAF00008263677 bam 724.8 MB
EGAF00008263678 bam 906.9 MB
EGAF00008263679 bam 345.5 MB
EGAF00008263680 bam 752.3 MB
EGAF00008263681 bam 503.2 MB
EGAF00008263682 bam 802.6 MB
EGAF00008263683 bam 625.3 MB
EGAF00008263684 bam 669.2 MB
EGAF00008263685 bam 605.8 MB
EGAF00008263686 bam 646.8 MB
EGAF00008263687 bam 796.6 MB
EGAF00008263688 bam 670.4 MB
EGAF00008263689 bam 1.3 GB
EGAF00008263690 bam 602.6 MB
EGAF00008263691 bam 613.3 MB
EGAF00008263693 bam 654.0 MB
EGAF00008263694 bam 537.1 MB
EGAF00008263695 bam 524.9 MB
EGAF00008263696 bam 460.4 MB
EGAF00008263697 bam 500.1 MB
EGAF00008263698 bam 557.6 MB
EGAF00008263700 bam 461.1 MB
EGAF00008263701 bam 584.9 MB
EGAF00008263702 bam 555.1 MB
EGAF00008263703 bam 496.5 MB
EGAF00008263704 bam 664.7 MB
EGAF00008263705 bam 582.7 MB
EGAF00008263707 bam 701.5 MB
EGAF00008263708 bam 622.7 MB
EGAF00008263709 bam 718.4 MB
EGAF00008263710 bam 734.7 MB
EGAF00008263712 bam 837.0 MB
EGAF00008263713 bam 632.1 MB
EGAF00008263714 bam 763.0 MB
EGAF00008263715 bam 800.3 MB
EGAF00008263716 bam 509.9 MB
EGAF00008263717 bam 547.2 MB
EGAF00008263719 bam 507.2 MB
EGAF00008263721 bam 524.2 MB
EGAF00008263722 bam 639.2 MB
EGAF00008263723 bam 625.1 MB
EGAF00008263724 bam 709.4 MB
EGAF00008263725 bam 3.1 GB
EGAF00008263727 bam 4.0 GB
EGAF00008263728 bam 485.8 MB
EGAF00008263729 bam 844.4 MB
EGAF00008263730 bam 740.8 MB
EGAF00008263731 bam 676.8 MB
EGAF00008263732 bam 642.9 MB
EGAF00008263733 bam 273.5 MB
EGAF00008263735 bam 404.3 MB
EGAF00008263736 bam 754.3 MB
EGAF00008263737 bam 634.5 MB
EGAF00008263738 bam 706.4 MB
EGAF00008263739 bam 148.8 MB
EGAF00008263740 bam 514.9 MB
EGAF00008263741 bam 656.2 MB
EGAF00008263743 bam 263.0 MB
EGAF00008263744 bam 642.8 MB
EGAF00008263745 bam 618.4 MB
EGAF00008263746 bam 537.3 MB
EGAF00008263747 bam 605.0 MB
EGAF00008263748 bam 571.5 MB
EGAF00008263750 bam 410.0 MB
EGAF00008263751 bam 598.2 MB
EGAF00008263752 bam 757.4 MB
EGAF00008263753 bam 613.4 MB
EGAF00008263754 bam 756.0 MB
EGAF00008263756 bam 467.7 MB
EGAF00008263757 bam 347.0 MB
EGAF00008263758 bam 564.2 MB
EGAF00008263759 bam 546.8 MB
EGAF00008263760 bam 473.5 MB
EGAF00008263761 bam 385.3 MB
EGAF00008263763 bam 764.2 MB
EGAF00008263765 bam 612.2 MB
EGAF00008263766 bam 947.4 MB
EGAF00008263767 bam 567.8 MB
EGAF00008263768 bam 792.5 MB
EGAF00008263769 bam 2.0 GB
EGAF00008263771 bam 938.4 MB
EGAF00008263772 bam 322.9 MB
EGAF00008263775 bam 535.4 MB
EGAF00008263776 bam 391.1 MB
EGAF00008263777 bam 303.3 MB
EGAF00008263778 bam 358.0 MB
EGAF00008263779 bam 441.0 MB
EGAF00008263780 bam 719.0 MB
EGAF00008263781 bam 805.5 MB
EGAF00008263782 bam 552.0 MB
EGAF00008263783 bam 436.7 MB
EGAF00008263784 bam 575.4 MB
EGAF00008263785 bam 523.7 MB
269 Files (162.5 GB)