Bulk RNA sequencing of SARC PDOs and UroCa PDOs.
This dataset contains raw FASTQ files from bulk RNA sequencing of SarBC-01 organoids at different passages (Passage 6, Pssage 19, Passage 59), UroBC-01 organoids (Passage 70), UroBC-16 organoids (Passage 19) and UroBC-22 organoids (Passage 8). RNA was isolated using the Quick-DNA/RNA Miniprep kit (Zymo Research, Irvine, CA, USA, D7001) and subjected to bulk RNA sequencing. TruSeq Stranded mRNA kit (Illumina, 20020594) was used for the library preparation according to manufacturer’s guidelines. Sequencing was performed on Illumina NovaSeq 6000 using paired-end 100-bp reads.
- 6 samples
- DAC: EGAC00001002981
- Technology: Illumina NovaSeq 6000
not available - do not use
not available - do not use
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007430 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008157577 | fastq.gz | 2.6 GB | ||
| EGAF00008157578 | fastq.gz | 2.7 GB | ||
| EGAF00008157579 | fastq.gz | 2.5 GB | ||
| EGAF00008157580 | fastq.gz | 2.6 GB | ||
| EGAF00008157581 | fastq.gz | 2.5 GB | ||
| EGAF00008157582 | fastq.gz | 2.6 GB | ||
| EGAF00008157583 | fastq.gz | 2.3 GB | ||
| EGAF00008157584 | fastq.gz | 2.4 GB | ||
| EGAF00008157585 | fastq.gz | 2.8 GB | ||
| EGAF00008157586 | fastq.gz | 2.9 GB | ||
| EGAF00008157587 | fastq.gz | 2.5 GB | ||
| EGAF00008157588 | fastq.gz | 2.6 GB | ||
| 12 Files (31.1 GB) | ||||