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Cell-free DNA sequencing data of healthy control, atrophic gastritis, and gastric cancer patients’ blood

Sample cohort (n=48) is consisted of healthy, atrophic gastritis and gastric cancer patients. Some of the gastric cancer patients samples are collected at the separate time points: -1 before the operation; -2 after the operation; -3 during the control visit. For the hybridisation capture of the genes unique 15 gastric cancer-related gene panel was developed and very deep sequencing using TruSight Oncology Unique Molecular Identifier (UMI) Reagents (Illumina) was used.

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Plasma Cell-free DNA Sequencing Study Data Access Policy

The scope of data access and publication is described in the approval of the Kaunas Regional Bioethics Committee (BE-2-31). Data is anonymised and encrypted and is available to registered users. There is a corresponding Data Access Committee (DAC) - Cell-free DNA Sequencing Data Access Committee - that determines access permissions. If you need to request access to this data set, please contact: Institute for digestive research (LSMU): Contact person: Greta Varkalaitė Email: greta.varkalaite@lsmuni.lt

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007308 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008096256 fastq.gz 6.3 GB
EGAF00008096257 fastq.gz 6.4 GB
EGAF00008096258 fastq.gz 9.9 GB
EGAF00008096259 fastq.gz 9.9 GB
EGAF00008096260 fastq.gz 3.1 GB
EGAF00008096261 fastq.gz 3.3 GB
EGAF00008096262 fastq.gz 6.8 GB
EGAF00008096263 fastq.gz 7.2 GB
EGAF00008096264 fastq.gz 9.3 GB
EGAF00008096265 fastq.gz 9.4 GB
EGAF00008096266 fastq.gz 10.8 GB
EGAF00008096267 fastq.gz 10.9 GB
EGAF00008096268 fastq.gz 8.1 GB
EGAF00008096269 fastq.gz 8.3 GB
EGAF00008096270 fastq.gz 9.1 GB
EGAF00008096271 fastq.gz 9.4 GB
EGAF00008096272 fastq.gz 6.9 GB
EGAF00008096273 fastq.gz 7.0 GB
EGAF00008096274 fastq.gz 9.8 GB
EGAF00008096275 fastq.gz 10.0 GB
EGAF00008096276 fastq.gz 10.7 GB
EGAF00008096277 fastq.gz 10.9 GB
EGAF00008096278 fastq.gz 9.7 GB
EGAF00008096279 fastq.gz 9.7 GB
EGAF00008096280 fastq.gz 8.8 GB
EGAF00008096281 fastq.gz 8.9 GB
EGAF00008096282 fastq.gz 10.8 GB
EGAF00008096283 fastq.gz 10.9 GB
EGAF00008096284 fastq.gz 8.0 GB
EGAF00008096285 fastq.gz 8.0 GB
EGAF00008096286 fastq.gz 8.5 GB
EGAF00008096287 fastq.gz 8.9 GB
EGAF00008096288 fastq.gz 10.0 GB
EGAF00008096289 fastq.gz 10.0 GB
EGAF00008096290 fastq.gz 10.3 GB
EGAF00008096291 fastq.gz 10.4 GB
EGAF00008096292 fastq.gz 7.4 GB
EGAF00008096293 fastq.gz 7.6 GB
EGAF00008096294 fastq.gz 9.8 GB
EGAF00008096295 fastq.gz 10.0 GB
EGAF00008096296 fastq.gz 10.8 GB
EGAF00008096297 fastq.gz 10.7 GB
EGAF00008096298 fastq.gz 7.7 GB
EGAF00008096299 fastq.gz 7.7 GB
EGAF00008096300 fastq.gz 7.9 GB
EGAF00008096301 fastq.gz 8.1 GB
EGAF00008096302 fastq.gz 12.2 GB
EGAF00008096303 fastq.gz 12.2 GB
EGAF00008096304 fastq.gz 9.8 GB
EGAF00008096305 fastq.gz 10.0 GB
EGAF00008096306 fastq.gz 10.8 GB
EGAF00008096307 fastq.gz 11.0 GB
EGAF00008096308 fastq.gz 10.5 GB
EGAF00008096309 fastq.gz 10.6 GB
EGAF00008096310 fastq.gz 9.6 GB
EGAF00008096311 fastq.gz 9.6 GB
EGAF00008096312 fastq.gz 10.4 GB
EGAF00008096313 fastq.gz 10.6 GB
EGAF00008096314 fastq.gz 11.4 GB
EGAF00008096315 fastq.gz 11.6 GB
EGAF00008096316 fastq.gz 16.6 GB
EGAF00008096317 fastq.gz 16.6 GB
EGAF00008096318 fastq.gz 9.5 GB
EGAF00008096319 fastq.gz 9.9 GB
EGAF00008096320 fastq.gz 7.2 GB
EGAF00008096321 fastq.gz 7.4 GB
EGAF00008096322 fastq.gz 7.6 GB
EGAF00008096323 fastq.gz 7.7 GB
EGAF00008096324 fastq.gz 11.9 GB
EGAF00008096325 fastq.gz 11.9 GB
EGAF00008096326 fastq.gz 16.5 GB
EGAF00008096327 fastq.gz 17.0 GB
EGAF00008096328 fastq.gz 5.7 GB
EGAF00008096329 fastq.gz 6.0 GB
EGAF00008096330 fastq.gz 4.2 GB
EGAF00008096331 fastq.gz 4.2 GB
EGAF00008096332 fastq.gz 6.6 GB
EGAF00008096333 fastq.gz 6.9 GB
EGAF00008096334 fastq.gz 4.9 GB
EGAF00008096335 fastq.gz 5.0 GB
EGAF00008096336 fastq.gz 2.9 GB
EGAF00008096337 fastq.gz 3.0 GB
EGAF00008096338 fastq.gz 5.9 GB
EGAF00008096339 fastq.gz 5.8 GB
EGAF00008096340 fastq.gz 7.0 GB
EGAF00008096341 fastq.gz 7.1 GB
EGAF00008096342 fastq.gz 8.8 GB
EGAF00008096343 fastq.gz 9.1 GB
EGAF00008096344 fastq.gz 7.2 GB
EGAF00008096345 fastq.gz 7.3 GB
EGAF00008096346 fastq.gz 2.2 GB
EGAF00008096347 fastq.gz 2.3 GB
EGAF00008096348 fastq.gz 2.9 GB
EGAF00008096349 fastq.gz 2.9 GB
EGAF00008096350 fastq.gz 2.9 GB
EGAF00008096351 fastq.gz 3.0 GB
96 Files (818.3 GB)