Mtb infected and uninfected neutrophils after 1 and 6 hrs
Fastq.gz files for mRNA sequenced from Mtb infected and uninfected neutrophils after 1 and 6 hrs. Samples were sequenced in 2 batched as indicated per experiment. Batch 1 was SE unstranded, 100bp on an Illumina HiSeq4000 sequencer and batch 2 unstranded, 150bp paired-end on an Illumina NovaSeq6000 sequencer. Phenotypic data for the samples is also included.
- 1 sample
- DAC: EGAC00001003255
- Technologies: Illumina HiSeq 4000, Illumina NovaSeq 6000
- DS DUO:0000007 (version: 2021-02-23)disease specific researchThis data use permission indicates that use is allowed provided it is related to the specified disease.ModifiersMONDO:0018076
- NCU DUO:0000046 (version: 2021-02-23)non-commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit use.
Qualified researchers can request access to the data by completing a Data Access Request form which will be evaluated by the Data Access Committee who will consult with the Health Research Ethics Committee of Stellenbosch and the Stellenbosch University Contracts Office. Data access will be for approved use and will be governed by the provisions laid out in the associated informed consent of individual data subjects and of the Health Research Ethics Committee of Stellenbosch University. All investigators will have to sign a Data Transfer Agreement as stipulated by the Stellenbosch University Contracts Office. A qualified researcher refers to a senior investigator who is employed or legitimately affiliated with an academic, non-profit or government institution and who has a track record in the field. Researchers granted access to Project Data must feedback the results of their research to the Data Access Committee, after publication for distribution to the community representative. Access is conditional upon availability of data and on signed agreement by the researcher(s) and the responsible employing institution to abide by the policies and conditions related to publication, data ownership, data return, intellectual property rights, data disposal, ethical approval, confidentiality and commercialization referred herein.
S18/08/175 (PhD) 23 March 2023 v1.0 Neutrophils as effector cells in resistance to infection by Mycobacterium tuberculosis in HIV- infected individuals (NeutroTB) Data Access Policy Qualified researchers can request access to the data by completing a Data Access Request form which will be evaluated by the Data Access Committee who will consult with the Health Research Ethics Committee of Stellenbosch and the Stellenbosch University Contracts Office. Data access will be for approved use and will be governed by the provisions laid out in the associated informed consent of individual data subjects and of the Health Research Ethics Committee of Stellenbosch University. All investigators will have to sign a Data Transfer Agreement as stipulated by the Stellenbosch University Contracts Office. A qualified researcher refers to a senior investigator who is employed or legitimately affiliated with an academic, non-profit or government institution and who has a track record in the field. Researchers granted access to Project Data must feedback the results of their research to the Data Access Committee, after publication for distribution to the community representative. Access is conditional upon availability of data and on signed agreement by the researcher(s) and the responsible employing institution to abide by the policies and conditions related to publication, data ownership, data return, intellectual property rights, data disposal, ethical approval, confidentiality and commercialization referred herein.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007262 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008081137 | fastq.gz | 1.8 GB | ||
| EGAF00008081138 | fastq.gz | 1.9 GB | ||
| EGAF00008081139 | fastq.gz | 1.7 GB | ||
| EGAF00008081140 | fastq.gz | 1.8 GB | ||
| EGAF00008081141 | fastq.gz | 1.5 GB | ||
| EGAF00008081142 | fastq.gz | 1.5 GB | ||
| EGAF00008081143 | fastq.gz | 1.3 GB | ||
| EGAF00008081144 | fastq.gz | 1.3 GB | ||
| EGAF00008081145 | fastq.gz | 1.9 GB | ||
| EGAF00008081146 | fastq.gz | 1.7 GB | ||
| EGAF00008081147 | fastq.gz | 1.8 GB | ||
| EGAF00008081148 | fastq.gz | 1.7 GB | ||
| EGAF00008081149 | fastq.gz | 1.7 GB | ||
| EGAF00008081150 | fastq.gz | 1.7 GB | ||
| EGAF00008081151 | fastq.gz | 2.3 GB | ||
| EGAF00008081152 | fastq.gz | 2.4 GB | ||
| EGAF00008081153 | fastq.gz | 2.0 GB | ||
| EGAF00008081154 | fastq.gz | 2.0 GB | ||
| EGAF00008081155 | fastq.gz | 1.8 GB | ||
| EGAF00008081156 | fastq.gz | 1.8 GB | ||
| EGAF00008081157 | fastq.gz | 1.8 GB | ||
| EGAF00008081158 | fastq.gz | 1.8 GB | ||
| EGAF00008081159 | fastq.gz | 1.7 GB | ||
| EGAF00008081160 | fastq.gz | 1.7 GB | ||
| EGAF00008081161 | fastq.gz | 1.3 GB | ||
| EGAF00008081162 | fastq.gz | 1.3 GB | ||
| EGAF00008081163 | fastq.gz | 2.1 GB | ||
| EGAF00008081164 | fastq.gz | 2.1 GB | ||
| EGAF00008081165 | fastq.gz | 2.6 GB | ||
| EGAF00008081166 | fastq.gz | 2.7 GB | ||
| EGAF00008081167 | fastq.gz | 1.7 GB | ||
| EGAF00008081168 | fastq.gz | 1.8 GB | ||
| EGAF00008081169 | fastq.gz | 1.6 GB | ||
| EGAF00008081170 | fastq.gz | 1.7 GB | ||
| EGAF00008081171 | fastq.gz | 2.3 GB | ||
| EGAF00008081172 | fastq.gz | 2.3 GB | ||
| EGAF00008081173 | fastq.gz | 1.6 GB | ||
| EGAF00008081174 | fastq.gz | 1.6 GB | ||
| EGAF00008081175 | fastq.gz | 1.6 GB | ||
| EGAF00008081176 | fastq.gz | 1.7 GB | ||
| EGAF00008081177 | fastq.gz | 1.9 GB | ||
| EGAF00008081178 | fastq.gz | 2.0 GB | ||
| EGAF00008081179 | fastq.gz | 1.2 GB | ||
| EGAF00008081180 | fastq.gz | 1.3 GB | ||
| EGAF00008081181 | fastq.gz | 1.9 GB | ||
| EGAF00008081182 | fastq.gz | 1.9 GB | ||
| EGAF00008081183 | fastq.gz | 1.3 GB | ||
| EGAF00008081184 | fastq.gz | 1.3 GB | ||
| EGAF00008081185 | fastq.gz | 1.7 GB | ||
| EGAF00008081186 | fastq.gz | 1.7 GB | ||
| EGAF00008081187 | fastq.gz | 2.5 GB | ||
| EGAF00008081188 | fastq.gz | 2.6 GB | ||
| EGAF00008081189 | fastq.gz | 1.4 GB | ||
| EGAF00008081190 | fastq.gz | 1.5 GB | ||
| EGAF00008081191 | fastq.gz | 2.1 GB | ||
| EGAF00008081192 | fastq.gz | 2.1 GB | ||
| EGAF00008081193 | fastq.gz | 1.7 GB | ||
| EGAF00008081194 | fastq.gz | 1.8 GB | ||
| EGAF00008081195 | fastq.gz | 881.0 MB | ||
| EGAF00008081196 | fastq.gz | 895.0 MB | ||
| EGAF00008081197 | fastq.gz | 1.5 GB | ||
| EGAF00008081198 | fastq.gz | 1.6 GB | ||
| EGAF00008081199 | fastq.gz | 1.9 GB | ||
| EGAF00008081200 | fastq.gz | 1.9 GB | ||
| EGAF00008081201 | fastq.gz | 1.7 GB | ||
| EGAF00008081202 | fastq.gz | 1.8 GB | ||
| EGAF00008081203 | fastq.gz | 1.4 GB | ||
| EGAF00008081204 | fastq.gz | 1.4 GB | ||
| EGAF00008081205 | fastq.gz | 1.7 GB | ||
| EGAF00008081206 | fastq.gz | 1.8 GB | ||
| EGAF00008081207 | fastq.gz | 1.8 GB | ||
| EGAF00008081208 | fastq.gz | 1.9 GB | ||
| EGAF00008081209 | fastq.gz | 1.6 GB | ||
| EGAF00008081210 | fastq.gz | 1.8 GB | ||
| EGAF00008081211 | fastq.gz | 1.6 GB | ||
| EGAF00008081212 | fastq.gz | 1.7 GB | ||
| EGAF00008081213 | fastq.gz | 1.9 GB | ||
| EGAF00008081214 | fastq.gz | 1.6 GB | ||
| EGAF00008081215 | fastq.gz | 1.4 GB | ||
| EGAF00008081216 | fastq.gz | 1.6 GB | ||
| EGAF00008081217 | fastq.gz | 1.6 GB | ||
| EGAF00008081218 | fastq.gz | 1.7 GB | ||
| EGAF00008081219 | fastq.gz | 1.4 GB | ||
| EGAF00008081220 | fastq.gz | 1.5 GB | ||
| EGAF00008081221 | fastq.gz | 1.2 GB | ||
| EGAF00008081222 | fastq.gz | 1.2 GB | ||
| EGAF00008081223 | fastq.gz | 1.4 GB | ||
| EGAF00008081224 | fastq.gz | 1.5 GB | ||
| EGAF00008081225 | fastq.gz | 1.6 GB | ||
| EGAF00008081226 | fastq.gz | 1.6 GB | ||
| EGAF00008081227 | fastq.gz | 1.4 GB | ||
| EGAF00008081228 | fastq.gz | 1.4 GB | ||
| EGAF00008081229 | fastq.gz | 1.6 GB | ||
| EGAF00008081230 | fastq.gz | 1.6 GB | ||
| EGAF00008081231 | fastq.gz | 1.4 GB | ||
| EGAF00008081232 | fastq.gz | 1.4 GB | ||
| EGAF00008081233 | fastq.gz | 1.8 GB | ||
| EGAF00008081234 | fastq.gz | 2.0 GB | ||
| EGAF00008081235 | fastq.gz | 2.0 GB | ||
| EGAF00008081236 | fastq.gz | 1.7 GB | ||
| EGAF00008081237 | fastq.gz | 1.6 GB | ||
| EGAF00008081238 | fastq.gz | 1.6 GB | ||
| EGAF00008081239 | fastq.gz | 1.6 GB | ||
| EGAF00008081240 | fastq.gz | 1.6 GB | ||
| EGAF00008081241 | fastq.gz | 1.4 GB | ||
| EGAF00008081242 | fastq.gz | 1.5 GB | ||
| EGAF00008081243 | fastq.gz | 1.8 GB | ||
| EGAF00008081244 | fastq.gz | 1.8 GB | ||
| EGAF00008081245 | fastq.gz | 1.5 GB | ||
| EGAF00008081246 | fastq.gz | 1.5 GB | ||
| EGAF00008081247 | fastq.gz | 1.7 GB | ||
| EGAF00008081248 | fastq.gz | 1.8 GB | ||
| EGAF00008081249 | fastq.gz | 1.8 GB | ||
| EGAF00008081250 | fastq.gz | 1.8 GB | ||
| EGAF00008081251 | fastq.gz | 1.6 GB | ||
| EGAF00008081252 | fastq.gz | 1.6 GB | ||
| EGAF00008081253 | fastq.gz | 1.9 GB | ||
| EGAF00008081254 | fastq.gz | 2.2 GB | ||
| EGAF00008081255 | fastq.gz | 1.7 GB | ||
| EGAF00008081256 | fastq.gz | 1.7 GB | ||
| EGAF00008081257 | fastq.gz | 1.7 GB | ||
| EGAF00008081258 | fastq.gz | 1.7 GB | ||
| EGAF00008081259 | fastq.gz | 1.7 GB | ||
| EGAF00008081260 | fastq.gz | 1.8 GB | ||
| EGAF00008081261 | fastq.gz | 1.7 GB | ||
| EGAF00008081262 | fastq.gz | 1.7 GB | ||
| EGAF00008081263 | fastq.gz | 1.4 GB | ||
| EGAF00008081264 | fastq.gz | 1.4 GB | ||
| EGAF00008081265 | fastq.gz | 1.7 GB | ||
| EGAF00008081266 | fastq.gz | 1.8 GB | ||
| EGAF00008081267 | fastq.gz | 1.7 GB | ||
| EGAF00008081268 | fastq.gz | 1.8 GB | ||
| EGAF00008081269 | fastq.gz | 2.0 GB | ||
| EGAF00008081270 | fastq.gz | 2.1 GB | ||
| EGAF00008081271 | fastq.gz | 1.6 GB | ||
| EGAF00008081272 | fastq.gz | 1.6 GB | ||
| EGAF00008081273 | fastq.gz | 1.2 GB | ||
| EGAF00008081274 | fastq.gz | 1.2 GB | ||
| EGAF00008081275 | fastq.gz | 1.4 GB | ||
| EGAF00008081276 | fastq.gz | 1.4 GB | ||
| EGAF00008081277 | fastq.gz | 1.1 GB | ||
| EGAF00008081278 | fastq.gz | 1.1 GB | ||
| EGAF00008081279 | fastq.gz | 1.1 GB | ||
| EGAF00008081280 | fastq.gz | 1.1 GB | ||
| EGAF00008081281 | fastq.gz | 1.7 GB | ||
| EGAF00008081282 | fastq.gz | 1.7 GB | ||
| EGAF00008081283 | fastq.gz | 1.6 GB | ||
| EGAF00008081284 | fastq.gz | 1.8 GB | ||
| EGAF00008081285 | fastq.gz | 1.2 GB | ||
| EGAF00008081286 | fastq.gz | 1.2 GB | ||
| EGAF00008081287 | fastq.gz | 1.7 GB | ||
| EGAF00008081288 | fastq.gz | 1.8 GB | ||
| EGAF00008081289 | fastq.gz | 1.5 GB | ||
| EGAF00008081290 | fastq.gz | 1.5 GB | ||
| EGAF00008081291 | fastq.gz | 1.5 GB | ||
| EGAF00008081292 | fastq.gz | 1.5 GB | ||
| EGAF00008081293 | fastq.gz | 1.3 GB | ||
| EGAF00008081294 | fastq.gz | 1.3 GB | ||
| EGAF00008081295 | fastq.gz | 1.7 GB | ||
| EGAF00008081296 | fastq.gz | 1.7 GB | ||
| EGAF00008081297 | fastq.gz | 1.4 GB | ||
| EGAF00008081298 | fastq.gz | 1.4 GB | ||
| EGAF00008081299 | fastq.gz | 1.6 GB | ||
| EGAF00008081300 | fastq.gz | 1.6 GB | ||
| EGAF00008081301 | fastq.gz | 1.4 GB | ||
| EGAF00008081302 | fastq.gz | 1.4 GB | ||
| EGAF00008081303 | fastq.gz | 1.7 GB | ||
| EGAF00008081304 | fastq.gz | 1.7 GB | ||
| EGAF00008081305 | fastq.gz | 1.6 GB | ||
| EGAF00008081306 | fastq.gz | 1.7 GB | ||
| EGAF00008081307 | fastq.gz | 1.6 GB | ||
| EGAF00008081308 | fastq.gz | 1.6 GB | ||
| EGAF00008081309 | fastq.gz | 1.6 GB | ||
| EGAF00008081310 | fastq.gz | 1.7 GB | ||
| EGAF00008081311 | fastq.gz | 856.2 MB | ||
| EGAF00008081312 | fastq.gz | 867.9 MB | ||
| EGAF00008081313 | fastq.gz | 1.3 GB | ||
| EGAF00008081314 | fastq.gz | 1.3 GB | ||
| EGAF00008081315 | fastq.gz | 2.0 GB | ||
| EGAF00008081316 | fastq.gz | 2.0 GB | ||
| EGAF00008081317 | fastq.gz | 2.1 GB | ||
| EGAF00008081318 | fastq.gz | 2.1 GB | ||
| EGAF00008081319 | fastq.gz | 1.8 GB | ||
| EGAF00008081320 | fastq.gz | 1.8 GB | ||
| EGAF00008081321 | fastq.gz | 1.4 GB | ||
| EGAF00008081322 | fastq.gz | 1.4 GB | ||
| EGAF00008081323 | fastq.gz | 2.0 GB | ||
| EGAF00008081324 | fastq.gz | 2.0 GB | ||
| EGAF00008081325 | fastq.gz | 1.1 GB | ||
| EGAF00008081326 | fastq.gz | 1.2 GB | ||
| EGAF00008081327 | fastq.gz | 1.5 GB | ||
| EGAF00008081328 | fastq.gz | 1.5 GB | ||
| EGAF00008081329 | fastq.gz | 1.4 GB | ||
| EGAF00008081330 | fastq.gz | 1.4 GB | ||
| EGAF00008081331 | fastq.gz | 1.5 GB | ||
| EGAF00008081332 | fastq.gz | 1.5 GB | ||
| 196 Files (322.5 GB) | ||||