Paired RNA-Seq of 32 samples of chemo-naïve and post-chemotherapy PDAC tumors
Paired RNA-Seq of 32 samples of chemo-naïve and post-chemotherapy PDAC tumors (HIPO_015) to define the molecular and cellular impact of neoadjuvant chemotherapy. Transcriptome analysis combined with high resolution mapping of whole tissue sections identified GATA6 (Classical), KRT17 (Basal-like) and Cytochrome P450 3A (CYP3A) co-expressing cells that were preferentially enriched in post-CTX resected samples. The sequencing was done on HiSeq2000/HiSeq2500 using the Takara_SMARTer_Ultra_Low_Input_RNA_and_NEBNext_ChIP-Seq Kit.
- 32 samples
- DAC: EGAC00001000452
- Technologies: Illumina HiSeq 2000, Illumina HiSeq 2500
Data Transfer Agreement for the German Cancer Research Center
To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007143 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00008025603 | fastq.gz | 4.9 GB | ||
| EGAF00008025604 | fastq.gz | 5.1 GB | ||
| EGAF00008025605 | fastq.gz | 3.3 GB | ||
| EGAF00008025606 | fastq.gz | 3.5 GB | ||
| EGAF00008025607 | fastq.gz | 3.2 GB | ||
| EGAF00008025608 | fastq.gz | 3.4 GB | ||
| EGAF00008025609 | fastq.gz | 6.6 GB | ||
| EGAF00008025610 | fastq.gz | 6.8 GB | ||
| EGAF00008025611 | fastq.gz | 6.7 GB | ||
| EGAF00008025612 | fastq.gz | 7.0 GB | ||
| EGAF00008025613 | fastq.gz | 6.0 GB | ||
| EGAF00008025614 | fastq.gz | 6.1 GB | ||
| EGAF00008025615 | fastq.gz | 4.4 GB | ||
| EGAF00008025616 | fastq.gz | 4.6 GB | ||
| EGAF00008025617 | fastq.gz | 6.0 GB | ||
| EGAF00008025618 | fastq.gz | 5.6 GB | ||
| EGAF00008025619 | fastq.gz | 7.1 GB | ||
| EGAF00008025620 | fastq.gz | 7.5 GB | ||
| EGAF00008025621 | fastq.gz | 5.1 GB | ||
| EGAF00008025622 | fastq.gz | 5.3 GB | ||
| EGAF00008025623 | fastq.gz | 6.0 GB | ||
| EGAF00008025624 | fastq.gz | 6.2 GB | ||
| EGAF00008025625 | fastq.gz | 7.0 GB | ||
| EGAF00008025626 | fastq.gz | 7.3 GB | ||
| EGAF00008025627 | fastq.gz | 4.5 GB | ||
| EGAF00008025628 | fastq.gz | 4.7 GB | ||
| EGAF00008025629 | fastq.gz | 7.4 GB | ||
| EGAF00008025630 | fastq.gz | 7.8 GB | ||
| EGAF00008025631 | fastq.gz | 3.5 GB | ||
| EGAF00008025632 | fastq.gz | 3.6 GB | ||
| EGAF00008025633 | fastq.gz | 3.4 GB | ||
| EGAF00008025634 | fastq.gz | 3.6 GB | ||
| EGAF00008025635 | fastq.gz | 3.0 GB | ||
| EGAF00008025636 | fastq.gz | 3.1 GB | ||
| EGAF00008025637 | fastq.gz | 3.0 GB | ||
| EGAF00008025638 | fastq.gz | 3.1 GB | ||
| EGAF00008025639 | fastq.gz | 6.4 GB | ||
| EGAF00008025640 | fastq.gz | 6.7 GB | ||
| EGAF00008025641 | fastq.gz | 6.3 GB | ||
| EGAF00008025642 | fastq.gz | 6.6 GB | ||
| EGAF00008025643 | fastq.gz | 6.4 GB | ||
| EGAF00008025644 | fastq.gz | 6.7 GB | ||
| EGAF00008025645 | fastq.gz | 6.9 GB | ||
| EGAF00008025646 | fastq.gz | 7.1 GB | ||
| EGAF00008025647 | fastq.gz | 4.2 GB | ||
| EGAF00008025648 | fastq.gz | 4.4 GB | ||
| EGAF00008025649 | fastq.gz | 4.8 GB | ||
| EGAF00008025650 | fastq.gz | 5.0 GB | ||
| EGAF00008025651 | fastq.gz | 2.9 GB | ||
| EGAF00008025652 | fastq.gz | 3.0 GB | ||
| EGAF00008025653 | fastq.gz | 2.9 GB | ||
| EGAF00008025654 | fastq.gz | 3.0 GB | ||
| EGAF00008025655 | fastq.gz | 3.0 GB | ||
| EGAF00008025656 | fastq.gz | 3.1 GB | ||
| EGAF00008025657 | fastq.gz | 3.0 GB | ||
| EGAF00008025658 | fastq.gz | 3.1 GB | ||
| EGAF00008025659 | fastq.gz | 3.0 GB | ||
| EGAF00008025660 | fastq.gz | 3.1 GB | ||
| EGAF00008025661 | fastq.gz | 2.9 GB | ||
| EGAF00008025662 | fastq.gz | 3.1 GB | ||
| EGAF00008025663 | fastq.gz | 2.2 GB | ||
| EGAF00008025664 | fastq.gz | 2.3 GB | ||
| EGAF00008025665 | fastq.gz | 2.3 GB | ||
| EGAF00008025666 | fastq.gz | 2.4 GB | ||
| EGAF00008025667 | fastq.gz | 2.9 GB | ||
| EGAF00008025668 | fastq.gz | 3.0 GB | ||
| EGAF00008025669 | fastq.gz | 2.9 GB | ||
| EGAF00008025670 | fastq.gz | 3.0 GB | ||
| EGAF00008025671 | fastq.gz | 6.5 GB | ||
| EGAF00008025672 | fastq.gz | 5.7 GB | ||
| EGAF00008025673 | fastq.gz | 8.1 GB | ||
| EGAF00008025674 | fastq.gz | 7.5 GB | ||
| EGAF00008025675 | fastq.gz | 3.1 GB | ||
| EGAF00008025676 | fastq.gz | 3.3 GB | ||
| EGAF00008025677 | fastq.gz | 3.2 GB | ||
| EGAF00008025678 | fastq.gz | 3.3 GB | ||
| EGAF00008025679 | fastq.gz | 7.0 GB | ||
| EGAF00008025680 | fastq.gz | 7.2 GB | ||
| EGAF00008025681 | fastq.gz | 3.2 GB | ||
| EGAF00008025682 | fastq.gz | 3.3 GB | ||
| EGAF00008025683 | fastq.gz | 3.2 GB | ||
| EGAF00008025684 | fastq.gz | 3.4 GB | ||
| EGAF00008025685 | fastq.gz | 5.0 GB | ||
| EGAF00008025686 | fastq.gz | 5.2 GB | ||
| 84 Files (392.1 GB) | ||||