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Targeted NGS panel

The mutational status of 121 genes recurrently altered in B-cell lymphoma was examined in 55 of 56 diagnostic and 10 of 12 relapse samples using a custom targeted NGS panel. Libraries were generated from 150 ng of DNA using molecular-barcoded library adapters (ThruPLEX Tag- seq kit; Takara) coupled with a custom hybridization capture-based method (SureSelectXT Target Enrichment System Capture strategy, Agilent Technologies). The quality of the libraries was determined using the Bioanalyzer high sensitivity DNA kit (Agilent) and quantified by PCR using the KAPA library quantification kit (KAPA Biosystems). Finally, the libraries were pooled and sequenced in the MiSeq instrument (Illumina).

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007105 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008061646 fastq.gz 538.2 MB
EGAF00008061647 fastq.gz 616.4 MB
EGAF00008061648 fastq.gz 644.3 MB
EGAF00008061649 fastq.gz 658.8 MB
EGAF00008061650 fastq.gz 756.7 MB
EGAF00008061651 fastq.gz 775.6 MB
EGAF00008061652 fastq.gz 554.1 MB
EGAF00008061653 fastq.gz 567.8 MB
EGAF00008061654 fastq.gz 468.8 MB
EGAF00008061655 fastq.gz 481.6 MB
EGAF00008061656 fastq.gz 615.8 MB
EGAF00008061657 fastq.gz 639.4 MB
EGAF00008061658 fastq.gz 751.8 MB
EGAF00008061659 fastq.gz 799.5 MB
EGAF00008061660 fastq.gz 745.7 MB
EGAF00008061661 fastq.gz 781.8 MB
EGAF00008061662 fastq.gz 581.0 MB
EGAF00008061663 fastq.gz 605.0 MB
EGAF00008061664 fastq.gz 861.0 MB
EGAF00008061665 fastq.gz 892.0 MB
EGAF00008061666 fastq.gz 978.8 MB
EGAF00008061667 fastq.gz 1.0 GB
EGAF00008061668 fastq.gz 1.3 GB
EGAF00008061669 fastq.gz 1.4 GB
EGAF00008061670 fastq.gz 903.3 MB
EGAF00008061671 fastq.gz 933.1 MB
EGAF00008061672 fastq.gz 444.1 MB
EGAF00008061673 fastq.gz 462.8 MB
EGAF00008061674 fastq.gz 786.9 MB
EGAF00008061675 fastq.gz 816.8 MB
EGAF00008061676 fastq.gz 891.8 MB
EGAF00008061677 fastq.gz 920.7 MB
EGAF00008061678 fastq.gz 402.1 MB
EGAF00008061679 fastq.gz 420.3 MB
EGAF00008061680 fastq.gz 695.6 MB
EGAF00008061681 fastq.gz 728.5 MB
EGAF00008061682 fastq.gz 989.2 MB
EGAF00008061683 fastq.gz 1.0 GB
EGAF00008061684 fastq.gz 841.7 MB
EGAF00008061685 fastq.gz 874.9 MB
EGAF00008061686 fastq.gz 634.8 MB
EGAF00008061687 fastq.gz 667.4 MB
EGAF00008061688 fastq.gz 516.2 MB
EGAF00008061689 fastq.gz 528.4 MB
EGAF00008061690 fastq.gz 672.6 MB
EGAF00008061691 fastq.gz 706.0 MB
EGAF00008061692 fastq.gz 560.3 MB
EGAF00008061693 fastq.gz 571.9 MB
EGAF00008061694 fastq.gz 985.2 MB
EGAF00008061695 fastq.gz 1.0 GB
EGAF00008061696 fastq.gz 954.8 MB
EGAF00008061697 fastq.gz 986.0 MB
EGAF00008061698 fastq.gz 959.2 MB
EGAF00008061699 fastq.gz 993.7 MB
EGAF00008061700 fastq.gz 951.6 MB
EGAF00008061701 fastq.gz 983.1 MB
EGAF00008061702 fastq.gz 839.2 MB
EGAF00008061703 fastq.gz 876.7 MB
EGAF00008061704 fastq.gz 685.1 MB
EGAF00008061705 fastq.gz 700.4 MB
EGAF00008061706 fastq.gz 842.7 MB
EGAF00008061707 fastq.gz 877.0 MB
EGAF00008061708 fastq.gz 538.6 MB
EGAF00008061709 fastq.gz 558.0 MB
EGAF00008061710 fastq.gz 995.9 MB
EGAF00008061711 fastq.gz 1.0 GB
EGAF00008061712 fastq.gz 786.1 MB
EGAF00008061713 fastq.gz 801.1 MB
EGAF00008061714 fastq.gz 1.1 GB
EGAF00008061715 fastq.gz 1.1 GB
EGAF00008061716 fastq.gz 1.0 GB
EGAF00008061717 fastq.gz 1.0 GB
EGAF00008061718 fastq.gz 1.2 GB
EGAF00008061719 fastq.gz 1.3 GB
EGAF00008061720 fastq.gz 546.9 MB
EGAF00008061721 fastq.gz 559.8 MB
EGAF00008061722 fastq.gz 664.5 MB
EGAF00008061723 fastq.gz 680.0 MB
EGAF00008061724 fastq.gz 909.3 MB
EGAF00008061725 fastq.gz 943.6 MB
EGAF00008061726 fastq.gz 593.1 MB
EGAF00008061727 fastq.gz 632.3 MB
EGAF00008061728 fastq.gz 1.3 GB
EGAF00008061729 fastq.gz 1.3 GB
EGAF00008061730 fastq.gz 752.4 MB
EGAF00008061731 fastq.gz 780.8 MB
EGAF00008061732 fastq.gz 812.4 MB
EGAF00008061733 fastq.gz 850.6 MB
EGAF00008061734 fastq.gz 695.5 MB
EGAF00008061735 fastq.gz 731.4 MB
EGAF00008061736 fastq.gz 671.5 MB
EGAF00008061737 fastq.gz 692.8 MB
EGAF00008061738 fastq.gz 762.4 MB
EGAF00008061739 fastq.gz 792.3 MB
EGAF00008061740 fastq.gz 717.3 MB
EGAF00008061741 fastq.gz 744.2 MB
EGAF00008061742 fastq.gz 750.4 MB
EGAF00008061743 fastq.gz 788.0 MB
EGAF00008061744 fastq.gz 871.3 MB
EGAF00008061745 fastq.gz 908.5 MB
EGAF00008061746 fastq.gz 513.4 MB
EGAF00008061747 fastq.gz 534.2 MB
EGAF00008061748 fastq.gz 825.0 MB
EGAF00008061749 fastq.gz 858.0 MB
EGAF00008061750 fastq.gz 947.7 MB
EGAF00008061751 fastq.gz 986.4 MB
EGAF00008061752 fastq.gz 421.2 MB
EGAF00008061753 fastq.gz 437.8 MB
EGAF00008061754 fastq.gz 1.0 GB
EGAF00008061755 fastq.gz 1.1 GB
EGAF00008061756 fastq.gz 787.1 MB
EGAF00008061757 fastq.gz 809.9 MB
EGAF00008061758 fastq.gz 597.6 MB
EGAF00008061759 fastq.gz 609.4 MB
EGAF00008061760 fastq.gz 992.8 MB
EGAF00008061761 fastq.gz 1.0 GB
EGAF00008061762 fastq.gz 847.0 MB
EGAF00008061763 fastq.gz 876.9 MB
EGAF00008061764 fastq.gz 633.0 MB
EGAF00008061765 fastq.gz 641.6 MB
EGAF00008061766 fastq.gz 423.1 MB
EGAF00008061767 fastq.gz 435.7 MB
EGAF00008061768 fastq.gz 643.5 MB
EGAF00008061769 fastq.gz 653.3 MB
EGAF00008061770 fastq.gz 883.4 MB
EGAF00008061771 fastq.gz 901.2 MB
EGAF00008061772 fastq.gz 343.8 MB
EGAF00008061773 fastq.gz 349.4 MB
EGAF00008061774 fastq.gz 937.8 MB
EGAF00008061775 fastq.gz 976.8 MB
130 Files (101.6 GB)