RNA sequencing datasets from isolated human subcutaneous and visceral adipocytes from obese and lean people
94 human adipocyte samples isolated from whole adipose tissues using collagenase digestion of tissue and flotation of lipid-laden adipocytes, followed by RNA isolation and RNA sequencing (SMARTer Stranded Total RNA-Seq library preparation, HiSeq 4000 100-bp paired-end reads). Adipocyte samples comprise subcutaneous and visceral adipocytes isolated from obese and lean people (N=24 obese-subcutaneous, N=24 obese-visceral, N=22 control-subcutaneous, N=24 control-visceral). Human adipocyte RNA sequencing data are provided as BAM files.
- 93 samples
- DAC: EGAC00001003168
- Technology: Illumina HiSeq 4000
Imperial College London Data Access Committee for accessing human adipocyte RNA sequencing datasets that contain genetic polymorphisms.
DATA ACCESS AGREEMENT (DAA) These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the Data Recipient Institution has requested access. The Data Recipient Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the Data Recipient Institution to whom the Data Controller grants access to the Data. This includes the individuals listed in Appendix II and any other individuals for whom the Data Recipient Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the Data Recipient Institution has requested access. Data Controller: The person(s) in Appendix I responsible for the development, organisation, and oversight of these Data. Project: The project for which the Data Recipient Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. Data Recipient (‘You’): The principal investigator for the Project. Data Recipient Institution(s): The Institution that has requested access to the Data. External Collaborator: A collaborator of the Data Recipient, working for an institution other than the Data Recipient Institution. GDPR: This DAA makes both parties compliant with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (herein referred to as the ‘GDPR’). Terms and Conditions In signing this Agreement: 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project. You further agree that you will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to identify Data Subjects. 4. You and your Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 5. You agree that in handling this Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 6. You acknowledge that Access to the Data is granted for the duration of the Project described in Section I, as well as any new Project under the same research field or area. Any use of the Data for a Project of another research field or area will need to be approved under a new Agreement. 7. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 8. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 9. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further Research, following the Organisation for Economic Co-operation and Development Guidelines. 10. You agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 11. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 12. You agree to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 13. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 14. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 15. You may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 16. You may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should You wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 18. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a ‘non-accidental or minor’ breach of DAA by You, You will further be required to destroy any Data held. 21. You accept that this Agreement will terminate immediately upon ‘any’ breach by You, or its termination (see Section I). 22. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. 23. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. The award of the arbitration will be final and binding upon the parties concerned. 24. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the Laws of England and Wales, and shall be subject to the exclusive jurisdiction of the English Courts. Agreed for Data Recipient Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for Data Controller Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the Data Controller before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data will be handled according to an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY The Data Controllers intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. The Data Controllers anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until the Data Controller(s) have published their own analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited on the relevant hosting database, whichever occurs first, unless The Data Controllers have provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with The Data Controllers.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001007118 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00008003086 | bam | 6.6 GB | ||
EGAF00008003087 | bam | 6.8 GB | ||
EGAF00008003088 | bam | 7.9 GB | ||
EGAF00008003089 | bam | 6.3 GB | ||
EGAF00008003090 | bam | 5.9 GB | ||
EGAF00008003091 | bam | 5.8 GB | ||
EGAF00008003092 | bam | 1.5 GB | ||
EGAF00008003093 | bam | 6.8 GB | ||
EGAF00008003094 | bam | 4.7 GB | ||
EGAF00008003095 | bam | 5.6 GB | ||
EGAF00008003096 | bam | 4.8 GB | ||
EGAF00008003097 | bam | 5.7 GB | ||
EGAF00008003098 | bam | 5.9 GB | ||
EGAF00008003099 | bam | 5.7 GB | ||
EGAF00008003100 | bam | 2.2 GB | ||
EGAF00008003101 | bam | 2.7 GB | ||
EGAF00008003102 | bam | 2.2 GB | ||
EGAF00008003103 | bam | 8.8 GB | ||
EGAF00008003104 | bam | 3.8 GB | ||
EGAF00008003105 | bam | 6.4 GB | ||
EGAF00008003106 | bam | 5.4 GB | ||
EGAF00008003107 | bam | 3.2 GB | ||
EGAF00008003108 | bam | 4.9 GB | ||
EGAF00008003109 | bam | 5.8 GB | ||
EGAF00008003110 | bam | 6.9 GB | ||
EGAF00008003111 | bam | 5.6 GB | ||
EGAF00008003112 | bam | 7.4 GB | ||
EGAF00008003113 | bam | 9.1 GB | ||
EGAF00008003114 | bam | 7.8 GB | ||
EGAF00008003115 | bam | 6.0 GB | ||
EGAF00008003116 | bam | 9.6 GB | ||
EGAF00008003117 | bam | 7.9 GB | ||
EGAF00008003118 | bam | 6.1 GB | ||
EGAF00008003119 | bam | 6.9 GB | ||
EGAF00008003120 | bam | 8.8 GB | ||
EGAF00008003121 | bam | 13.1 GB | ||
EGAF00008003122 | bam | 7.2 GB | ||
EGAF00008003123 | bam | 6.2 GB | ||
EGAF00008003124 | bam | 7.0 GB | ||
EGAF00008003125 | bam | 7.1 GB | ||
EGAF00008003126 | bam | 8.5 GB | ||
EGAF00008003127 | bam | 7.6 GB | ||
EGAF00008003128 | bam | 6.0 GB | ||
EGAF00008003129 | bam | 5.4 GB | ||
EGAF00008003130 | bam | 2.4 GB | ||
EGAF00008003131 | bam | 4.8 GB | ||
EGAF00008003132 | bam | 5.6 GB | ||
EGAF00008003133 | bam | 9.2 GB | ||
EGAF00008003134 | bam | 7.1 GB | ||
EGAF00008003135 | bam | 7.1 GB | ||
EGAF00008003136 | bam | 5.9 GB | ||
EGAF00008003137 | bam | 6.5 GB | ||
EGAF00008003138 | bam | 8.8 GB | ||
EGAF00008003139 | bam | 3.4 GB | ||
EGAF00008003140 | bam | 18.0 GB | ||
EGAF00008003141 | bam | 7.4 GB | ||
EGAF00008003142 | bam | 8.4 GB | ||
EGAF00008003143 | bam | 6.2 GB | ||
EGAF00008003144 | bam | 9.1 GB | ||
EGAF00008003145 | bam | 6.0 GB | ||
EGAF00008003146 | bam | 8.4 GB | ||
EGAF00008003147 | bam | 6.8 GB | ||
EGAF00008003148 | bam | 4.6 GB | ||
EGAF00008003149 | bam | 11.2 GB | ||
EGAF00008003150 | bam | 10.8 GB | ||
EGAF00008003151 | bam | 6.0 GB | ||
EGAF00008003152 | bam | 8.1 GB | ||
EGAF00008003153 | bam | 4.4 GB | ||
EGAF00008003154 | bam | 1.7 GB | ||
EGAF00008003155 | bam | 4.3 GB | ||
EGAF00008003156 | bam | 5.1 GB | ||
EGAF00008003157 | bam | 7.8 GB | ||
EGAF00008003158 | bam | 6.5 GB | ||
EGAF00008003159 | bam | 7.4 GB | ||
EGAF00008003160 | bam | 6.8 GB | ||
EGAF00008003161 | bam | 5.3 GB | ||
EGAF00008003162 | bam | 11.3 GB | ||
EGAF00008003163 | bam | 6.7 GB | ||
EGAF00008003164 | bam | 4.9 GB | ||
EGAF00008003165 | bam | 4.4 GB | ||
EGAF00008003166 | bam | 6.1 GB | ||
EGAF00008003167 | bam | 7.3 GB | ||
EGAF00008003168 | bam | 4.2 GB | ||
EGAF00008003169 | bam | 2.4 GB | ||
EGAF00008003170 | bam | 5.8 GB | ||
EGAF00008003171 | bam | 8.1 GB | ||
EGAF00008003172 | bam | 7.7 GB | ||
EGAF00008003173 | bam | 7.2 GB | ||
EGAF00008003174 | bam | 8.0 GB | ||
EGAF00008003175 | bam | 9.1 GB | ||
EGAF00008003176 | bam | 7.4 GB | ||
EGAF00008003177 | bam | 10.3 GB | ||
EGAF00008003178 | bam | 6.5 GB | ||
EGAF00008003179 | bam | 7.1 GB | ||
94 Files (621.5 GB) |