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CRUK-ICGC Prostate DNA Methylation Sequencing Dataset (Prostatectomy Batches 1-6)

This dataset includes Illumina EPIC Capture Sequencing Data of 376 samples from 188 men with prostate cancer. Samples were taken from primary tissue obtained at prostatectomy, with matched pathologically assessed non-cancer control material. This DNA methylation data includes donors and samples included in previously published WGS datasets (from CRUK-ICGC batches 1 to 3 [EGAD00001001116] and batches 4 to 6 [EGAD00001003225]; including the majority of donors used in Wedge et al, Nature Genetics 2018 [PMID: 29662167]). The targeted DNA methylation sequencing data in this EGA dataset were generated using the Illumina TruSeq methyl capture method (EPICseq), covering over 3.3 million CpGs in the human genome, representing a total targeted hybridisation capture panel of 107Mbp. According to the EPICseq protocol, DNA samples extracted from prostatectomy tissue samples were enriched for target regions using hybridisation capture, prior to bisulfite conversion, amplification and sequencing in pools of 12 samples (150 single end reads over two Illumina HiSeq4000 lanes). This approach generated DNA methylation profiles from prostate cancer and control samples at base-pair resolution across millions of CpGs in the human genome.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001000262 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007988434 bam 5.0 GB
EGAF00007988435 bam 5.2 GB
EGAF00007988436 bam 4.1 GB
EGAF00007988437 bam 3.4 GB
EGAF00007988438 bam 4.1 GB
EGAF00007988439 bam 4.2 GB
EGAF00007988440 bam 4.6 GB
EGAF00007988441 bam 4.0 GB
EGAF00007988442 bam 5.0 GB
EGAF00007988443 bam 5.6 GB
EGAF00007988444 bam 4.1 GB
EGAF00007988445 bam 4.6 GB
EGAF00007988446 bam 3.5 GB
EGAF00007988447 bam 3.6 GB
EGAF00007988448 bam 3.2 GB
EGAF00007988449 bam 4.5 GB
EGAF00007988450 bam 3.0 GB
EGAF00007988451 bam 5.0 GB
EGAF00007988452 bam 4.0 GB
EGAF00007988453 bam 3.7 GB
EGAF00007988454 bam 3.6 GB
EGAF00007988455 bam 4.9 GB
EGAF00007988456 bam 3.8 GB
EGAF00007988457 bam 4.4 GB
EGAF00007988458 bam 4.2 GB
EGAF00007988459 bam 4.5 GB
EGAF00007988460 bam 4.3 GB
EGAF00007988461 bam 5.2 GB
EGAF00007988462 bam 3.8 GB
EGAF00007988463 bam 4.8 GB
EGAF00007988464 bam 5.3 GB
EGAF00007988465 bam 4.2 GB
EGAF00007988466 bam 4.2 GB
EGAF00007988467 bam 3.3 GB
EGAF00007988468 bam 5.1 GB
EGAF00007988469 bam 4.3 GB
EGAF00007988470 bam 4.1 GB
EGAF00007988471 bam 4.4 GB
EGAF00007988472 bam 3.3 GB
EGAF00007988473 bam 4.4 GB
EGAF00007988474 bam 5.4 GB
EGAF00007988475 bam 586.7 MB
EGAF00007988476 bam 5.1 GB
EGAF00007988477 bam 2.7 GB
EGAF00007988478 bam 4.8 GB
EGAF00007988479 bam 4.4 GB
EGAF00007988480 bam 4.4 GB
EGAF00007988481 bam 4.0 GB
EGAF00007988482 bam 4.9 GB
EGAF00007988483 bam 4.9 GB
EGAF00007988484 bam 3.6 GB
EGAF00007988485 bam 4.0 GB
EGAF00007988486 bam 3.7 GB
EGAF00007988487 bam 4.7 GB
EGAF00007988488 bam 4.4 GB
EGAF00007988489 bam 3.6 GB
EGAF00007988490 bam 3.3 GB
EGAF00007988491 bam 4.2 GB
EGAF00007988492 bam 3.4 GB
EGAF00007988493 bam 3.3 GB
EGAF00007988494 bam 4.5 GB
EGAF00007988495 bam 4.7 GB
EGAF00007988496 bam 3.6 GB
EGAF00007988497 bam 4.4 GB
EGAF00007988498 bam 4.8 GB
EGAF00007988499 bam 3.9 GB
EGAF00007988500 bam 4.2 GB
EGAF00007988501 bam 4.4 GB
EGAF00007988502 bam 2.9 GB
EGAF00007988503 bam 4.7 GB
EGAF00007988504 bam 4.5 GB
EGAF00007988505 bam 4.0 GB
EGAF00007988506 bam 2.7 GB
EGAF00007988507 bam 3.8 GB
EGAF00007988508 bam 3.1 GB
EGAF00007988509 bam 3.8 GB
EGAF00007988510 bam 3.4 GB
EGAF00007988511 bam 4.6 GB
EGAF00007988512 bam 3.5 GB
EGAF00007988513 bam 4.3 GB
EGAF00007988514 bam 3.9 GB
EGAF00007988515 bam 4.4 GB
EGAF00007988516 bam 3.9 GB
EGAF00007988517 bam 3.6 GB
EGAF00007988518 bam 3.9 GB
EGAF00007988519 bam 3.6 GB
EGAF00007988520 bam 4.5 GB
EGAF00007988521 bam 3.6 GB
EGAF00007988522 bam 4.1 GB
EGAF00007988523 bam 4.5 GB
EGAF00007988524 bam 194.2 MB
EGAF00007988525 bam 232.2 MB
EGAF00007988526 bam 6.2 GB
EGAF00007988527 bam 6.3 GB
EGAF00007988528 bam 3.6 GB
EGAF00007988529 bam 3.8 GB
EGAF00007988530 bam 4.2 GB
EGAF00007988531 bam 3.7 GB
EGAF00007988532 bam 4.7 GB
EGAF00007988533 bam 3.3 GB
EGAF00007988534 bam 3.5 GB
EGAF00007988535 bam 4.1 GB
EGAF00007988536 bam 4.5 GB
EGAF00007988537 bam 4.4 GB
EGAF00007988538 bam 4.3 GB
EGAF00007988539 bam 4.9 GB
EGAF00007988540 bam 3.3 GB
EGAF00007988541 bam 3.7 GB
EGAF00007988542 bam 3.4 GB
EGAF00007988543 bam 4.3 GB
EGAF00007988544 bam 5.0 GB
EGAF00007988545 bam 3.1 GB
EGAF00007988546 bam 3.7 GB
EGAF00007988547 bam 3.5 GB
EGAF00007988548 bam 3.9 GB
EGAF00007988549 bam 3.4 GB
EGAF00007988550 bam 3.7 GB
EGAF00007988551 bam 2.6 GB
EGAF00007988552 bam 4.1 GB
EGAF00007988553 bam 4.0 GB
EGAF00007988554 bam 3.9 GB
EGAF00007988555 bam 5.4 GB
EGAF00007988556 bam 4.6 GB
EGAF00007988557 bam 4.9 GB
EGAF00007988558 bam 3.6 GB
EGAF00007988559 bam 1.5 GB
EGAF00007988560 bam 3.8 GB
EGAF00007988561 bam 4.6 GB
EGAF00007988562 bam 4.1 GB
EGAF00007988563 bam 4.6 GB
EGAF00007988564 bam 4.1 GB
EGAF00007988565 bam 3.9 GB
EGAF00007988566 bam 3.4 GB
EGAF00007988567 bam 4.7 GB
EGAF00007988568 bam 4.8 GB
EGAF00007988569 bam 4.6 GB
EGAF00007988570 bam 3.2 GB
EGAF00007988571 bam 4.9 GB
EGAF00007988572 bam 3.7 GB
EGAF00007988573 bam 5.8 GB
EGAF00007988574 bam 3.2 GB
EGAF00007988575 bam 5.1 GB
EGAF00007988576 bam 3.8 GB
EGAF00007988577 bam 3.6 GB
EGAF00007988578 bam 4.0 GB
EGAF00007988579 bam 4.2 GB
EGAF00007988580 bam 3.4 GB
EGAF00007988581 bam 4.8 GB
EGAF00007988582 bam 4.2 GB
EGAF00007988583 bam 5.3 GB
EGAF00007988584 bam 3.5 GB
EGAF00007988585 bam 4.5 GB
EGAF00007988586 bam 4.2 GB
EGAF00007988587 bam 4.0 GB
EGAF00007988588 bam 4.6 GB
EGAF00007988589 bam 4.2 GB
EGAF00007988590 bam 4.8 GB
EGAF00007988591 bam 3.5 GB
EGAF00007988592 bam 4.4 GB
EGAF00007988593 bam 4.5 GB
EGAF00007988594 bam 2.9 GB
EGAF00007988595 bam 2.6 GB
EGAF00007988596 bam 4.0 GB
EGAF00007988597 bam 4.0 GB
EGAF00007988598 bam 4.5 GB
EGAF00007988599 bam 5.3 GB
EGAF00007988600 bam 4.8 GB
EGAF00007988601 bam 4.1 GB
EGAF00007988602 bam 4.4 GB
EGAF00007988603 bam 6.2 GB
EGAF00007988604 bam 4.0 GB
EGAF00007988605 bam 3.5 GB
EGAF00007988606 bam 5.3 GB
EGAF00007988607 bam 3.7 GB
EGAF00007988608 bam 4.0 GB
EGAF00007988609 bam 4.0 GB
EGAF00007988610 bam 4.2 GB
EGAF00007988611 bam 3.8 GB
EGAF00007988612 bam 3.0 GB
EGAF00007988613 bam 3.4 GB
EGAF00007988614 bam 4.5 GB
EGAF00007988615 bam 4.0 GB
EGAF00007988616 bam 4.3 GB
EGAF00007988617 bam 5.0 GB
EGAF00007988618 bam 4.1 GB
EGAF00007988619 bam 2.1 GB
EGAF00007988620 bam 4.2 GB
EGAF00007988621 bam 4.5 GB
EGAF00007988622 bam 4.8 GB
EGAF00007988623 bam 4.9 GB
EGAF00007988624 bam 3.5 GB
EGAF00007988625 bam 3.9 GB
EGAF00007988626 bam 3.0 GB
EGAF00007988627 bam 3.2 GB
EGAF00007988628 bam 3.5 GB
EGAF00007988629 bam 4.0 GB
EGAF00007988630 bam 3.6 GB
EGAF00007988631 bam 3.2 GB
EGAF00007988632 bam 3.4 GB
EGAF00007988633 bam 4.4 GB
EGAF00007988634 bam 3.7 GB
EGAF00007988635 bam 412.2 MB
EGAF00007988636 bam 4.6 GB
EGAF00007988637 bam 5.1 GB
EGAF00007988638 bam 3.5 GB
EGAF00007988639 bam 4.2 GB
EGAF00007988640 bam 2.8 GB
EGAF00007988641 bam 2.4 GB
EGAF00007988642 bam 5.0 GB
EGAF00007988643 bam 3.8 GB
EGAF00007988644 bam 3.8 GB
EGAF00007988645 bam 3.8 GB
EGAF00007988646 bam 5.6 GB
EGAF00007988647 bam 4.6 GB
EGAF00007988648 bam 3.8 GB
EGAF00007988649 bam 4.0 GB
EGAF00007988650 bam 3.8 GB
EGAF00007988651 bam 3.6 GB
EGAF00007988652 bam 4.7 GB
EGAF00007988653 bam 4.6 GB
EGAF00007988654 bam 3.1 GB
EGAF00007988655 bam 3.5 GB
EGAF00007988656 bam 2.4 GB
EGAF00007988657 bam 2.9 GB
EGAF00007988658 bam 4.2 GB
EGAF00007988659 bam 3.3 GB
EGAF00007988660 bam 4.0 GB
EGAF00007988661 bam 3.8 GB
EGAF00007988662 bam 4.3 GB
EGAF00007988663 bam 4.0 GB
EGAF00007988664 bam 3.5 GB
EGAF00007988665 bam 4.1 GB
EGAF00007988666 bam 3.8 GB
EGAF00007988667 bam 2.2 GB
EGAF00007988668 bam 272.2 MB
EGAF00007988669 bam 218.2 MB
EGAF00007988670 bam 1.9 GB
EGAF00007988671 bam 4.2 GB
EGAF00007988672 bam 4.6 GB
EGAF00007988673 bam 5.1 GB
EGAF00007988674 bam 4.3 GB
EGAF00007988675 bam 4.3 GB
EGAF00007988676 bam 3.3 GB
EGAF00007988677 bam 4.0 GB
EGAF00007988678 bam 5.9 GB
EGAF00007988679 bam 5.2 GB
EGAF00007988680 bam 4.2 GB
EGAF00007988681 bam 3.7 GB
EGAF00007988682 bam 4.8 GB
EGAF00007988683 bam 4.0 GB
EGAF00007988684 bam 4.2 GB
EGAF00007988685 bam 4.2 GB
EGAF00007988686 bam 3.0 GB
EGAF00007988687 bam 4.1 GB
EGAF00007988688 bam 3.9 GB
EGAF00007988689 bam 4.0 GB
EGAF00007988690 bam 4.0 GB
EGAF00007988691 bam 3.9 GB
EGAF00007988692 bam 3.5 GB
EGAF00007988693 bam 3.9 GB
EGAF00007988694 bam 2.7 GB
EGAF00007988695 bam 3.4 GB
EGAF00007988696 bam 4.7 GB
EGAF00007988697 bam 2.3 GB
EGAF00007988698 bam 3.6 GB
EGAF00007988699 bam 6.4 GB
EGAF00007988700 bam 4.9 GB
EGAF00007988701 bam 5.5 GB
EGAF00007988702 bam 3.4 GB
EGAF00007988703 bam 3.5 GB
EGAF00007988704 bam 3.0 GB
EGAF00007988705 bam 3.5 GB
EGAF00007988706 bam 3.8 GB
EGAF00007988707 bam 5.6 GB
EGAF00007988708 bam 3.5 GB
EGAF00007988709 bam 3.6 GB
EGAF00007988710 bam 3.7 GB
EGAF00007988711 bam 3.6 GB
EGAF00007988712 bam 4.9 GB
EGAF00007988713 bam 4.5 GB
EGAF00007988714 bam 3.7 GB
EGAF00007988715 bam 3.5 GB
EGAF00007988716 bam 3.9 GB
EGAF00007988717 bam 4.2 GB
EGAF00007988718 bam 3.1 GB
EGAF00007988719 bam 3.6 GB
EGAF00007988720 bam 3.7 GB
EGAF00007988721 bam 4.2 GB
EGAF00007988722 bam 2.9 GB
EGAF00007988723 bam 4.1 GB
EGAF00007988724 bam 3.2 GB
EGAF00007988725 bam 3.2 GB
EGAF00007988726 bam 3.5 GB
EGAF00007988727 bam 4.1 GB
EGAF00007988728 bam 3.5 GB
EGAF00007988729 bam 4.0 GB
EGAF00007988730 bam 6.9 GB
EGAF00007988731 bam 2.4 GB
EGAF00007988732 bam 6.5 GB
EGAF00007988733 bam 6.2 GB
EGAF00007988734 bam 4.2 GB
EGAF00007988735 bam 4.6 GB
EGAF00007988736 bam 4.2 GB
EGAF00007988737 bam 4.5 GB
EGAF00007988738 bam 3.0 GB
EGAF00007988739 bam 3.0 GB
EGAF00007988740 bam 10.2 GB
EGAF00007988741 bam 7.4 GB
EGAF00007988742 bam 3.0 GB
EGAF00007988743 bam 4.4 GB
EGAF00007988744 bam 2.2 GB
EGAF00007988745 bam 5.3 GB
EGAF00007988746 bam 3.2 GB
EGAF00007988747 bam 4.0 GB
EGAF00007988748 bam 4.0 GB
EGAF00007988749 bam 4.0 GB
EGAF00007988750 bam 4.4 GB
EGAF00007988751 bam 1.6 GB
EGAF00007988752 bam 3.4 GB
EGAF00007988753 bam 3.7 GB
EGAF00007988754 bam 4.0 GB
EGAF00007988755 bam 4.9 GB
EGAF00007988756 bam 3.4 GB
EGAF00007988757 bam 4.3 GB
EGAF00007988758 bam 4.7 GB
EGAF00007988759 bam 1.9 GB
EGAF00007988760 bam 3.9 GB
EGAF00007988761 bam 4.5 GB
EGAF00007988762 bam 3.5 GB
EGAF00007988763 bam 4.3 GB
EGAF00007988764 bam 4.2 GB
EGAF00007988765 bam 4.2 GB
EGAF00007988766 bam 4.5 GB
EGAF00007988767 bam 4.7 GB
EGAF00007988768 bam 5.3 GB
EGAF00007988769 bam 4.0 GB
EGAF00007988770 bam 4.7 GB
EGAF00007988771 bam 5.0 GB
EGAF00007988772 bam 2.4 GB
EGAF00007988773 bam 3.4 GB
EGAF00007988774 bam 3.8 GB
EGAF00007988775 bam 4.0 GB
EGAF00007988776 bam 4.2 GB
EGAF00007988777 bam 4.3 GB
EGAF00007988778 bam 3.2 GB
EGAF00007988779 bam 2.7 GB
EGAF00007988780 bam 3.9 GB
EGAF00007988781 bam 3.0 GB
EGAF00007988782 bam 4.5 GB
EGAF00007988783 bam 3.6 GB
EGAF00007988784 bam 3.9 GB
EGAF00007988785 bam 3.7 GB
EGAF00007988786 bam 3.2 GB
EGAF00007988787 bam 3.3 GB
EGAF00007988788 bam 4.1 GB
EGAF00007988789 bam 3.7 GB
EGAF00007988790 bam 4.5 GB
EGAF00007988791 bam 4.3 GB
EGAF00007988792 bam 3.4 GB
EGAF00007988793 bam 4.5 GB
EGAF00007988794 bam 3.6 GB
EGAF00007988795 bam 4.8 GB
EGAF00007988796 bam 3.9 GB
EGAF00007988797 bam 4.4 GB
EGAF00007988798 bam 3.8 GB
EGAF00007988799 bam 5.5 GB
EGAF00007988800 bam 4.2 GB
EGAF00007988801 bam 3.8 GB
EGAF00007988802 bam 3.2 GB
EGAF00007988803 bam 3.6 GB
EGAF00007988804 bam 4.9 GB
EGAF00007988805 bam 3.0 GB
EGAF00007988806 bam 4.7 GB
EGAF00007988807 bam 7.0 GB
EGAF00007988808 bam 3.7 GB
EGAF00007988809 bam 4.6 GB
376 Files (1.5 TB)