Gut microbiome from melanoma patients
Metagenomics shotgun sequencing was conducted on fecal samples from the Australian patients enrolled in the OpACIN-neo clinical trial (n = 38). Metagenomic shotgun sequencing was performed utilizing the same DNA from the same preparations as for the 16S rRNA gene analysis. Individual libraries were prepared using Nextera XT, and sequencing was performed on the Illumina NovaSeq 6000 S1 (2 x 150bp; Xp workflow).
- 38 samples
- DAC: EGAC00001003081
- Technology: Illumina NovaSeq 6000
The data sets were collected under the Melanoma Institute Australia Biospecimen Bank for Melanoma Research Protocol, Melanoma Research Database Protocol and Melanoma Institute Australia Molecular Pathology, Genomics and Clinical Outcomes Of Melanoma And Related Skin Tumor Protocol.
Samples were collected under the Melanoma Institute Australia Biospecimen Bank for Melanoma Research Protocol (X15-0454, HREC/11/RPAH/444), and clinical data were collected under the Melanoma Institute Australia: Melanoma Research Database Protocol (X15-0311, HREC/10/RPAH/530). Analysis was conducted under the Melanoma Institute Australia Molecular Pathology, Genomics and Clinical Outcomes Of Melanoma And Related Skin Tumor Protocol (X17-0312, HREC/11/RPAH/32)
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006982 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00007916846 | fastq.gz | 1.3 GB | ||
| EGAF00007916847 | fastq.gz | 1.4 GB | ||
| EGAF00007916848 | fastq.gz | 913.6 MB | ||
| EGAF00007916848 | 1675731622934 | 913.9 MB | ||
| EGAF00007916849 | fastq.gz | 990.7 MB | ||
| EGAF00007916849 | 1675731622935 | 991.2 MB | ||
| EGAF00007916850 | fastq.gz | 1.8 GB | ||
| EGAF00007916850 | 1675733421915 | 1.8 GB | ||
| EGAF00007916851 | fastq.gz | 1.9 GB | ||
| EGAF00007916852 | 1675732522169 | 1.7 GB | ||
| EGAF00007916852 | fastq.gz | 1.7 GB | ||
| EGAF00007916853 | fastq.gz | 1.8 GB | ||
| EGAF00007916854 | fastq.gz | 1.6 GB | ||
| EGAF00007916855 | fastq.gz | 1.6 GB | ||
| EGAF00007916856 | fastq.gz | 417.5 MB | ||
| EGAF00007916857 | fastq.gz | 433.1 MB | ||
| EGAF00007916858 | 1675732522167 | 1.1 GB | ||
| EGAF00007916858 | fastq.gz | 1.1 GB | ||
| EGAF00007916859 | 1675732522167 | 1.1 GB | ||
| EGAF00007916859 | fastq.gz | 1.1 GB | ||
| EGAF00007916860 | 1675737921588 | 2.8 GB | ||
| EGAF00007916860 | fastq.gz | 2.8 GB | ||
| EGAF00007916861 | fastq.gz | 2.9 GB | ||
| EGAF00007916862 | fastq.gz | 1.3 GB | ||
| EGAF00007916863 | fastq.gz | 1.3 GB | ||
| EGAF00007916864 | fastq.gz | 2.0 GB | ||
| EGAF00007916865 | fastq.gz | 2.0 GB | ||
| EGAF00007916866 | fastq.gz | 2.2 GB | ||
| EGAF00007916867 | fastq.gz | 2.1 GB | ||
| EGAF00007916868 | 1675734321404 | 2.3 GB | ||
| EGAF00007916868 | fastq.gz | 2.3 GB | ||
| EGAF00007916869 | fastq.gz | 2.4 GB | ||
| EGAF00007916870 | fastq.gz | 2.0 GB | ||
| EGAF00007916871 | fastq.gz | 2.1 GB | ||
| EGAF00007916872 | fastq.gz | 1.9 GB | ||
| EGAF00007916873 | fastq.gz | 1.9 GB | ||
| EGAF00007916874 | fastq.gz | 1.6 GB | ||
| EGAF00007916874 | 1675731622934 | 1.6 GB | ||
| EGAF00007916875 | fastq.gz | 1.6 GB | ||
| EGAF00007916876 | fastq.gz | 1.7 GB | ||
| EGAF00007916877 | fastq.gz | 1.6 GB | ||
| EGAF00007916878 | fastq.gz | 1.6 GB | ||
| EGAF00007916878 | 1675732522167 | 1.6 GB | ||
| EGAF00007916879 | fastq.gz | 1.6 GB | ||
| EGAF00007916880 | fastq.gz | 1.9 GB | ||
| EGAF00007916881 | fastq.gz | 1.9 GB | ||
| EGAF00007916882 | fastq.gz | 1.5 GB | ||
| EGAF00007916883 | fastq.gz | 1.5 GB | ||
| EGAF00007916883 | 1675730722426 | 1.5 GB | ||
| EGAF00007916884 | fastq.gz | 1.4 GB | ||
| EGAF00007916885 | fastq.gz | 1.4 GB | ||
| EGAF00007916886 | 1675733421915 | 1.6 GB | ||
| EGAF00007916886 | fastq.gz | 1.6 GB | ||
| EGAF00007916887 | fastq.gz | 1.6 GB | ||
| EGAF00007916888 | fastq.gz | 2.2 GB | ||
| EGAF00007916889 | fastq.gz | 2.1 GB | ||
| EGAF00007916890 | fastq.gz | 1.5 GB | ||
| EGAF00007916891 | fastq.gz | 1.5 GB | ||
| EGAF00007916892 | fastq.gz | 1.4 GB | ||
| EGAF00007916893 | fastq.gz | 1.3 GB | ||
| EGAF00007916893 | 1675730722426 | 1.3 GB | ||
| EGAF00007916894 | fastq.gz | 1.7 GB | ||
| EGAF00007916894 | 1675730722426 | 1.7 GB | ||
| EGAF00007916895 | fastq.gz | 1.7 GB | ||
| EGAF00007916896 | fastq.gz | 1.8 GB | ||
| EGAF00007916897 | fastq.gz | 1.9 GB | ||
| EGAF00007916898 | fastq.gz | 2.6 GB | ||
| EGAF00007916899 | fastq.gz | 2.7 GB | ||
| EGAF00007916900 | fastq.gz | 2.2 GB | ||
| EGAF00007916901 | fastq.gz | 2.3 GB | ||
| EGAF00007916902 | fastq.gz | 2.3 GB | ||
| EGAF00007916903 | fastq.gz | 2.3 GB | ||
| EGAF00007916904 | fastq.gz | 2.1 GB | ||
| EGAF00007916905 | fastq.gz | 2.1 GB | ||
| EGAF00007916906 | fastq.gz | 1.9 GB | ||
| EGAF00007916907 | fastq.gz | 1.9 GB | ||
| EGAF00007916908 | fastq.gz | 2.2 GB | ||
| EGAF00007916908 | 1675732522167 | 2.2 GB | ||
| EGAF00007916909 | fastq.gz | 2.3 GB | ||
| EGAF00007916910 | fastq.gz | 2.1 GB | ||
| EGAF00007916911 | fastq.gz | 2.1 GB | ||
| EGAF00007916912 | fastq.gz | 2.4 GB | ||
| EGAF00007916913 | fastq.gz | 2.5 GB | ||
| EGAF00007916914 | fastq.gz | 2.2 GB | ||
| EGAF00007916915 | fastq.gz | 2.2 GB | ||
| EGAF00007916916 | fastq.gz | 2.0 GB | ||
| EGAF00007916917 | fastq.gz | 2.0 GB | ||
| EGAF00007916918 | fastq.gz | 2.2 GB | ||
| EGAF00007916919 | fastq.gz | 2.1 GB | ||
| EGAF00007916920 | fastq.gz | 1.4 GB | ||
| EGAF00007916921 | fastq.gz | 1.4 GB | ||
| 91 Files (163.0 GB) | ||||