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WGS data from LCNEC patient derived tumor organoids (PDTOs) and matched parental tumors - SA

The dataset includes cram files from WGS of 2 LCNEC tumors and matched PDTOs. For all tumors, cram files from WGS of matched normal tissue derived organoids from the corresponding patients is included. Analysis VCF files are also included in the dataset. The sequencing was done with a NovaSeq 6000 instrument.

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Neuroendocrine neoplasm organoids project's data access policy - SA samples

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact dacdbg@umcutrecht.nl Following DUO codes are applied to the SA datasets: DUO_0000022

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005752 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005686465 cram 69.9 GB
EGAF00005686466 cram 140.3 GB
EGAF00005686467 cram 154.4 GB
EGAF00005686468 cram 56.0 GB
EGAF00005686469 cram 181.0 GB
EGAF00005686470 cram 53.5 GB
EGAF00005686471 cram 189.4 GB
EGAF00005687401 crai 4.8 MB
EGAF00005687402 crai 1.6 MB
EGAF00005687411 crai 4.2 MB
EGAF00005687418 crai 1.9 MB
EGAF00005687421 crai 5.3 MB
EGAF00005687425 crai 3.8 MB
EGAF00005687429 crai 1.5 MB
EGAF00006881718 vcf.gz 8.5 MB
EGAF00006881719 vcf.gz 32.6 MB
16 Files (844.6 GB)