WGS data from NEN patient derived tumor organoids (PDTOs) and matched parental tumors - UMCU/NKI
The dataset includes cram files from WGS of 6 NEN tumors or metastases and matched PDTOs. For all tumors, cram files from WGS of either matched normal tissue or matched blood from the corresponding patients are included. Analysis VCF files are also included in the dataset. The sequencing was done with a NovaSeq 6000 instrument.
- 1 sample
- DAC: EGAC00001003060
- Technology: Illumina NovaSeq 6000
Neuroendocrine neoplasm organoids project's data access policy - UMCU/NKI samples
For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact dacdbg@umcutrecht.nl Following DUO codes are applied to the UMCU/NKI datasets: DUO_0000007; MONDO:0004992
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005752 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00005686458 | cram | 69.1 GB | ||
| EGAF00005686472 | cram | 71.6 GB | ||
| EGAF00005686473 | cram | 128.2 GB | ||
| EGAF00005686474 | cram | 124.3 GB | ||
| EGAF00005686475 | cram | 52.2 GB | ||
| EGAF00005686476 | cram | 181.0 GB | ||
| EGAF00005686477 | cram | 173.2 GB | ||
| EGAF00005686478 | cram | 202.4 GB | ||
| EGAF00005686486 | cram | 63.7 GB | ||
| EGAF00005686487 | cram | 181.7 GB | ||
| EGAF00005686488 | cram | 164.4 GB | ||
| EGAF00005686489 | cram | 210.7 GB | ||
| EGAF00005686491 | cram | 107.3 GB | ||
| EGAF00005686492 | cram | 102.6 GB | ||
| EGAF00005686497 | cram | 65.7 GB | ||
| EGAF00005686498 | cram | 97.1 GB | ||
| EGAF00005686499 | cram | 110.2 GB | ||
| EGAF00005686500 | cram | 131.9 GB | ||
| EGAF00005686501 | cram | 144.1 GB | ||
| EGAF00005686502 | cram | 90.6 GB | ||
| EGAF00005687398 | crai | 5.5 MB | ||
| EGAF00005687399 | crai | 4.8 MB | ||
| EGAF00005687400 | crai | 3.4 MB | ||
| EGAF00005687403 | crai | 3.6 MB | ||
| EGAF00005687405 | crai | 5.1 MB | ||
| EGAF00005687407 | crai | 3.4 MB | ||
| EGAF00005687409 | crai | 2.6 MB | ||
| EGAF00005687410 | crai | 4.1 MB | ||
| EGAF00005687412 | crai | 4.6 MB | ||
| EGAF00005687415 | crai | 3.5 MB | ||
| EGAF00005687416 | crai | 4.6 MB | ||
| EGAF00005687419 | crai | 1.8 MB | ||
| EGAF00005687420 | crai | 1.8 MB | ||
| EGAF00005687422 | crai | 3.6 MB | ||
| EGAF00005687424 | crai | 3.1 MB | ||
| EGAF00005687426 | crai | 4.4 MB | ||
| EGAF00005687427 | crai | 3.4 MB | ||
| EGAF00005687428 | crai | 1.8 MB | ||
| EGAF00005687430 | crai | 1.4 MB | ||
| EGAF00005687431 | crai | 1.7 MB | ||
| EGAF00006881720 | vcf.gz | 2.9 MB | ||
| EGAF00006881721 | vcf.gz | 5.3 MB | ||
| EGAF00006881724 | vcf.gz | 7.5 MB | ||
| EGAF00006881725 | vcf.gz | 1.9 MB | ||
| EGAF00006881726 | vcf.gz | 1.7 MB | ||
| EGAF00006881727 | vcf.gz | 2.3 MB | ||
| 46 Files (2.5 TB) | ||||