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RNA sequencing

RNAseq of 45 high-grade serous ovarian cancer tumour samples. Libraries were generated using the NEB Ultra II Directional RNA library Prep kit with polyA enrichment. Libraries were sequenced as paired-end 50 or 100bp on an Illumina NextSeq or NovaSeq.

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Peter MacCallum Cancer Centre Research Data Access Committee data access policy

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. 3. The User Institution agrees to protect the confidentiality and privacy of Research Participants in any research papers or publications that they prepare by using their best efforts to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the User Institution that may arise (whether directly or indirectly) in any way whatsoever from the User Institution’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Authorship guide and the Toronto Statement. This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research relating to the Data. 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Peter Mac within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Peter Mac prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Peter Mac as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Peter Mac may terminate this agreement by written notice to the User Institution at any time and for any reason or no reason. If this agreement is terminated, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Peter Mac. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected by Peter Mac or its delegate to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Victoria, Australia, and shall be subject to the exclusive jurisdiction of the Victorian courts. 20. The User Institution agrees that its rights and obligations hereunder are not assignable. 21. This agreement does not constitute any party the agent of another or imply that the parties intend constituting a partnership, joint venture or other form of association in which any party may be liable for the acts or omissions of the other.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007829287 1671111036197 1.4 GB
EGAF00007829288 1671109254431 1.4 GB
EGAF00007829289 1671109254431 1.4 GB
EGAF00007829290 1671109254431 1.5 GB
EGAF00007829291 1671110134754 1.4 GB
EGAF00007829292 1671110134754 1.5 GB
EGAF00007829293 1671109254431 1.4 GB
EGAF00007829294 1671111931163 1.5 GB
EGAF00007829295 1671109254432 1.4 GB
EGAF00007829296 1671111036197 1.5 GB
EGAF00007829297 1671110134754 1.4 GB
EGAF00007829298 1671109254432 1.5 GB
EGAF00007829299 1671109254432 1.4 GB
EGAF00007829300 1671110134754 1.5 GB
EGAF00007829301 1671109254431 1.4 GB
EGAF00007829302 1671110134754 1.5 GB
EGAF00007829303 1671120921672 1.5 GB
EGAF00007829304 1671110134754 1.5 GB
EGAF00007829305 1671111931163 1.6 GB
EGAF00007829306 1671109254431 1.6 GB
EGAF00007829307 1671110134754 1.6 GB
EGAF00007829308 1671110134753 1.6 GB
EGAF00007829309 1671111036197 1.6 GB
EGAF00007829310 1671111931163 1.6 GB
EGAF00007829311 1671110134754 1.6 GB
EGAF00007829312 1671111931163 1.6 GB
EGAF00007829313 1671111931163 1.6 GB
EGAF00007829314 1671111036197 1.6 GB
EGAF00007829315 1671111036197 1.6 GB
EGAF00007829316 1671111036197 1.6 GB
EGAF00007829317 1671111036197 1.6 GB
EGAF00007829318 1671111036197 1.7 GB
EGAF00007829319 1671110134754 1.6 GB
EGAF00007829320 1671110134754 1.7 GB
EGAF00007829321 1675245621066 1.6 GB
EGAF00007829322 1671111036197 1.7 GB
EGAF00007829323 1671111931164 1.4 GB
EGAF00007829324 1671110134754 1.5 GB
EGAF00007829325 1671110134754 887.1 MB
EGAF00007829326 1671109254431 900.8 MB
EGAF00007829327 1671109254431 878.8 MB
EGAF00007829328 1671110134754 883.7 MB
EGAF00007829329 1671109254431 876.3 MB
EGAF00007829330 1671109254431 882.9 MB
EGAF00007829331 1671109254431 878.8 MB
EGAF00007829332 1671108335497 888.1 MB
EGAF00007829333 1671108335497 882.3 MB
EGAF00007829334 1671109254431 893.0 MB
EGAF00007829335 1671108335497 884.3 MB
EGAF00007829336 1671111036197 893.0 MB
EGAF00007829337 1671110134753 890.3 MB
EGAF00007829338 1671109254431 903.9 MB
EGAF00007829339 1671109254431 898.0 MB
EGAF00007829340 1671108335497 914.4 MB
EGAF00007829341 1671108335497 1.4 GB
EGAF00007829342 1671109254431 1.5 GB
EGAF00007829343 1671109254431 1.3 GB
EGAF00007829344 1671109254431 1.3 GB
EGAF00007829345 1671109254431 1.2 GB
EGAF00007829346 1671109254431 1.2 GB
EGAF00007829347 1671109254431 1.2 GB
EGAF00007829348 1671111036197 1.3 GB
EGAF00007829349 1671110134753 1.4 GB
EGAF00007829350 1671109254431 1.4 GB
EGAF00007829351 1671111036197 1.4 GB
EGAF00007829352 1671109254431 1.4 GB
EGAF00007829353 1671109254431 1.4 GB
EGAF00007829354 1671110134753 1.4 GB
EGAF00007829355 1671109254431 1.4 GB
EGAF00007829356 1671110134754 1.4 GB
EGAF00007829357 1671110134754 1.4 GB
EGAF00007829358 1671110134754 1.4 GB
EGAF00007829359 1671109254431 1.4 GB
EGAF00007829360 1671111036197 1.4 GB
EGAF00007829361 1671109254431 1.4 GB
EGAF00007829362 1671109254431 1.4 GB
EGAF00007829363 1671111036197 1.4 GB
EGAF00007829364 1671109254431 1.4 GB
EGAF00007829365 1671111036197 1.2 GB
EGAF00007829366 1671111036197 1.2 GB
EGAF00007829367 1671108335497 1.3 GB
EGAF00007829368 1671111931164 1.3 GB
EGAF00007829369 1671113723401 1.2 GB
EGAF00007829370 1671111931163 1.3 GB
EGAF00007829371 1671111931163 1.2 GB
EGAF00007829372 1671111931163 1.2 GB
EGAF00007829373 1671112824385 1.4 GB
EGAF00007829374 1671111931163 1.4 GB
EGAF00007829375 1671111036197 971.8 MB
EGAF00007829376 1671112824385 965.0 MB
EGAF00007829377 1671111036197 963.7 MB
EGAF00007829378 1671111036197 945.5 MB
EGAF00007829379 1671111036197 961.4 MB
EGAF00007829380 1671111931163 946.7 MB
EGAF00007829381 1671111036197 964.6 MB
EGAF00007829382 1671111036197 953.8 MB
EGAF00007829383 1671111036197 966.7 MB
EGAF00007829384 1671111036197 958.2 MB
EGAF00007829385 1671110134754 969.6 MB
EGAF00007829386 1671111036197 959.0 MB
EGAF00007829387 1671111036197 975.2 MB
EGAF00007829388 1671112824385 969.6 MB
EGAF00007829389 1671111931163 984.1 MB
EGAF00007829390 1671111036197 983.6 MB
EGAF00007829391 1671111036197 1.2 GB
EGAF00007829392 1671111036197 1.3 GB
EGAF00007829393 1671111036197 786.0 MB
EGAF00007829394 1671110134753 790.2 MB
EGAF00007829395 1671111036197 775.7 MB
EGAF00007829396 1671111036197 777.2 MB
EGAF00007829397 1671111036197 775.3 MB
EGAF00007829398 1671111931163 777.3 MB
EGAF00007829399 1671111036197 778.1 MB
EGAF00007829400 1671110134754 782.2 MB
EGAF00007829401 1671111931163 780.4 MB
EGAF00007829402 1671111036197 786.7 MB
EGAF00007829403 1671110134754 781.6 MB
EGAF00007829404 1671110134754 785.9 MB
EGAF00007829405 1671110134754 785.4 MB
EGAF00007829406 1671111931163 794.3 MB
EGAF00007829407 1671110134754 791.6 MB
EGAF00007829408 1671111931163 802.6 MB
EGAF00007829409 1671110134754 1.4 GB
EGAF00007829410 1671111931163 1.5 GB
EGAF00007829411 1671111931163 1.8 GB
EGAF00007829412 1671111036197 1.9 GB
EGAF00007829413 1671111931163 1.8 GB
EGAF00007829414 1671111036197 1.8 GB
EGAF00007829415 1671111931163 1.1 GB
EGAF00007829416 1671111036197 1.1 GB
EGAF00007829417 1671111036197 1.1 GB
EGAF00007829418 1671110134754 1.1 GB
EGAF00007829419 1671111036197 1.2 GB
EGAF00007829420 1671110134754 1.3 GB
EGAF00007829421 1671110134753 892.5 MB
EGAF00007829422 1671110134753 921.8 MB
EGAF00007829423 1671110134753 885.7 MB
EGAF00007829424 1671110134754 906.0 MB
EGAF00007829425 1671110134754 883.8 MB
EGAF00007829426 1671110134753 904.8 MB
EGAF00007829427 1671110134753 886.6 MB
EGAF00007829428 1671111036197 910.5 MB
EGAF00007829429 1671110134754 890.4 MB
EGAF00007829430 1671111036197 915.2 MB
EGAF00007829431 1671111931163 892.9 MB
EGAF00007829432 1671111931163 915.5 MB
EGAF00007829433 1671111931163 896.8 MB
EGAF00007829434 1671110134754 924.9 MB
EGAF00007829435 1671111036197 904.5 MB
EGAF00007829436 1671110134754 935.5 MB
EGAF00007829437 1671110134754 1.3 GB
EGAF00007829438 1671110134754 1.4 GB
EGAF00007829439 1671110134754 1.1 GB
EGAF00007829440 1671110134754 1.2 GB
EGAF00007829441 1671110134754 787.3 MB
EGAF00007829442 1671111036197 810.6 MB
EGAF00007829443 1671111931163 1.7 GB
EGAF00007829444 1671112824385 1.8 GB
EGAF00007829445 1671110134754 1.2 GB
EGAF00007829446 1671111036197 1.2 GB
EGAF00007829447 1671111036197 1.0 GB
EGAF00007829448 1671111036197 1.1 GB
EGAF00007829449 1671110134754 2.2 GB
EGAF00007829450 1671109254431 2.3 GB
EGAF00007829451 1671107426351 1.1 GB
EGAF00007829452 1671108335497 1.1 GB
EGAF00007829453 1671108335497 892.5 MB
EGAF00007829454 1671108335497 935.5 MB
EGAF00007829455 1671106525106 1.1 GB
EGAF00007829456 1671109254431 1.1 GB
EGAF00007829457 1671107426351 2.7 GB
EGAF00007829458 1671108335497 2.9 GB
EGAF00007829459 1671109254431 1.3 GB
EGAF00007829460 1671111036197 1.4 GB
EGAF00007829461 1671108335497 973.5 MB
EGAF00007829462 1671107426351 1.0 GB
EGAF00007829463 1671106525106 898.9 MB
EGAF00007829464 1671107426351 931.9 MB
EGAF00007829465 1671107426351 868.4 MB
EGAF00007829466 1671111036197 899.4 MB
EGAF00007829467 1671109254431 1.0 GB
EGAF00007829468 1671108335497 1.1 GB
EGAF00007829469 1671109254431 1.2 GB
EGAF00007829470 1671111931163 1.3 GB
EGAF00007829471 1671110134754 1.8 GB
EGAF00007829472 1671108335497 1.8 GB
EGAF00007829473 1671108335497 1.7 GB
EGAF00007829474 1671107426351 1.8 GB
188 Files (231.2 GB)