Single cell RNA-sequencing of tissues from NSCLC patients treated with chemoimmunotherapy
The goal of this study is to characterize immune cell populations by single cell RNA-sequencing (scRNA-seq) in tumor and uninvolved normal tissues from non-small cell lung cancer (NSCLC) patients with resectable non-small cell lung cancer and who received neoadjuvant chemoimmunotherapy. scRNA-seq was performed on seven pairs of tumor and normal tissues as well as one lymph node (LN) sample. Data set includes pair-end fastq files for single cell RNA sequencing of 7 neo-immuno patients. (Total 15 samples and 50 runs).
- 15 samples
- DAC: EGAC00001002967
- Technology: Illumina NovaSeq 6000
Academic requests of data access will be granted after approval from institutional committee and institutional/Bristol Myers Squibb alliance.
The deposited single-cell RNA-sequencing raw data will be made available upon acceptance of academic requests. Access to this dataset is controlled by the institutional Data Access Committee in compliance with the NIH policy for Data Management and Sharing and in accordance with an institutional/Bristol Myers Squibb alliance.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00007731249 | 1668734121016 | 15.0 GB | ||
| EGAF00007731250 | 1668733221130 | 15.6 GB | ||
| EGAF00007731251 | 1668733221130 | 15.0 GB | ||
| EGAF00007731252 | 1668733221130 | 15.7 GB | ||
| EGAF00007731253 | 1668732321313 | 14.8 GB | ||
| EGAF00007731254 | 1668733221130 | 15.5 GB | ||
| EGAF00007731255 | 1668733221130 | 14.9 GB | ||
| EGAF00007731256 | 1668733221130 | 15.6 GB | ||
| EGAF00007731257 | 1668732321313 | 5.5 GB | ||
| EGAF00007731258 | 1668732321313 | 14.0 GB | ||
| EGAF00007731259 | 1668732321313 | 5.4 GB | ||
| EGAF00007731260 | 1668733221130 | 13.9 GB | ||
| EGAF00007731261 | 1668732321313 | 4.7 GB | ||
| EGAF00007731262 | 1668733221130 | 11.9 GB | ||
| EGAF00007731263 | 1668732321312 | 4.7 GB | ||
| EGAF00007731264 | 1668731421591 | 11.8 GB | ||
| EGAF00007731265 | 1668732321312 | 5.1 GB | ||
| EGAF00007731266 | 1668734121016 | 13.0 GB | ||
| EGAF00007731267 | 1668731421592 | 5.1 GB | ||
| EGAF00007731268 | 1668732321312 | 13.0 GB | ||
| EGAF00007731269 | 1668731421591 | 2.7 GB | ||
| EGAF00007731270 | 1668732321312 | 6.8 GB | ||
| EGAF00007731271 | 1668731421591 | 2.7 GB | ||
| EGAF00007731272 | 1668733221130 | 6.8 GB | ||
| EGAF00007731273 | 1668731421591 | 2.7 GB | ||
| EGAF00007731274 | 1668732321312 | 6.7 GB | ||
| EGAF00007731275 | 1668732321312 | 2.7 GB | ||
| EGAF00007731276 | 1668732321313 | 6.7 GB | ||
| EGAF00007731277 | 1668732321312 | 2.8 GB | ||
| EGAF00007731278 | 1668731421591 | 7.0 GB | ||
| EGAF00007731279 | 1668731421591 | 3.1 GB | ||
| EGAF00007731280 | 1670477421011 | 7.8 GB | ||
| EGAF00007731281 | 1668731421591 | 3.1 GB | ||
| EGAF00007731282 | 1668731421591 | 7.7 GB | ||
| EGAF00007731283 | 1668732321312 | 3.1 GB | ||
| EGAF00007731284 | 1668733221130 | 7.7 GB | ||
| EGAF00007731285 | 1668732321312 | 3.1 GB | ||
| EGAF00007731286 | 1668732321312 | 7.6 GB | ||
| EGAF00007731287 | 1668732321312 | 3.1 GB | ||
| EGAF00007731288 | 1668732321313 | 7.6 GB | ||
| EGAF00007731289 | 1668731421591 | 3.1 GB | ||
| EGAF00007731290 | 1668732321313 | 7.6 GB | ||
| EGAF00007731291 | 1668731421591 | 3.0 GB | ||
| EGAF00007731292 | 1668732321313 | 7.5 GB | ||
| EGAF00007731293 | 1668731421591 | 3.0 GB | ||
| EGAF00007731294 | 1668732321312 | 7.5 GB | ||
| EGAF00007731295 | 1668732321312 | 3.3 GB | ||
| EGAF00007731296 | 1668733221130 | 8.3 GB | ||
| EGAF00007731297 | 1668731421591 | 3.4 GB | ||
| EGAF00007731298 | 1668731421591 | 8.7 GB | ||
| EGAF00007731299 | 1668732321312 | 3.4 GB | ||
| EGAF00007731300 | 1668732321312 | 8.6 GB | ||
| EGAF00007731301 | 1668731421591 | 3.4 GB | ||
| EGAF00007731302 | 1668731421591 | 8.6 GB | ||
| EGAF00007731303 | 1668732321313 | 3.4 GB | ||
| EGAF00007731304 | 1668731421591 | 8.5 GB | ||
| EGAF00007731305 | 1668732321312 | 3.8 GB | ||
| EGAF00007731306 | 1668733221130 | 9.7 GB | ||
| EGAF00007731307 | 1668731421591 | 3.8 GB | ||
| EGAF00007731308 | 1668731421591 | 9.7 GB | ||
| EGAF00007731309 | 1668731421591 | 3.8 GB | ||
| EGAF00007731310 | 1668733221130 | 9.6 GB | ||
| EGAF00007731311 | 1668731421591 | 3.8 GB | ||
| EGAF00007731312 | 1668733221130 | 9.6 GB | ||
| EGAF00007731313 | 1668731421591 | 3.2 GB | ||
| EGAF00007731314 | 1668733221130 | 7.9 GB | ||
| EGAF00007731315 | 1668731421591 | 3.1 GB | ||
| EGAF00007731316 | 1668732321312 | 7.9 GB | ||
| EGAF00007731317 | 1668732321312 | 3.1 GB | ||
| EGAF00007731318 | 1668733221130 | 7.9 GB | ||
| EGAF00007731319 | 1668732321312 | 3.1 GB | ||
| EGAF00007731320 | 1668731421591 | 7.8 GB | ||
| EGAF00007731321 | 1668731421591 | 2.9 GB | ||
| EGAF00007731322 | 1670476521110 | 7.3 GB | ||
| EGAF00007731323 | 1668732321312 | 2.9 GB | ||
| EGAF00007731324 | 1668732321312 | 7.3 GB | ||
| EGAF00007731325 | 1668731421591 | 2.8 GB | ||
| EGAF00007731326 | 1668732321313 | 7.2 GB | ||
| EGAF00007731327 | 1668731421591 | 2.8 GB | ||
| EGAF00007731328 | 1668732321312 | 7.2 GB | ||
| EGAF00007731329 | 1668732321312 | 2.8 GB | ||
| EGAF00007731330 | 1668732321313 | 7.2 GB | ||
| EGAF00007731331 | 1668732321312 | 2.8 GB | ||
| EGAF00007731332 | 1668732321312 | 7.1 GB | ||
| EGAF00007731333 | 1668731421592 | 2.8 GB | ||
| EGAF00007731334 | 1668732321312 | 7.1 GB | ||
| EGAF00007731335 | 1668732321313 | 2.8 GB | ||
| EGAF00007731336 | 1668732321312 | 7.1 GB | ||
| EGAF00007809210 | 1669983321505 | 2.9 GB | ||
| EGAF00007809211 | 1669984221549 | 7.1 GB | ||
| EGAF00007809212 | 1669983321505 | 2.9 GB | ||
| EGAF00007809213 | 1669984221549 | 7.1 GB | ||
| EGAF00007809214 | 1669983321505 | 2.8 GB | ||
| EGAF00007809215 | 1669985121034 | 7.1 GB | ||
| EGAF00007809216 | 1669983321505 | 3.3 GB | ||
| EGAF00007809217 | 1669984221549 | 8.4 GB | ||
| EGAF00007809218 | 1669984221549 | 3.3 GB | ||
| EGAF00007809219 | 1669984221549 | 8.3 GB | ||
| EGAF00007809220 | 1669983321505 | 3.3 GB | ||
| EGAF00007809221 | 1669984221549 | 8.3 GB | ||
| 100 Files (665.3 GB) | ||||