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pan-cancer plasma cfRNA

Dataset contains mRNA capture sequencing data from plasma of 266 different human donors. The first, pan-cancer, cohort covers 25 high-grade to metastatic cancer types (8 cancer patients per type) and a control group (8 healthy donors). The validation cohort comprises additional plasma samples from ovarian, prostate and uterine cancer patients (12 per type) as well as additional samples from controls (22 new and 8 repeated). Samples were sequenced on a NovaSeq 6000 and are provided in FASTQ format.

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pan-cancer plasma RNA sequencing data access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom XXXXX grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.govinfo.gov/app/details/FR-2005-04-11/05-7247 ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007661057 1668126625151 572.7 MB
EGAF00007661058 1668126625151 588.4 MB
EGAF00007661059 1668127522465 2.4 GB
EGAF00007661060 1668128421332 2.4 GB
EGAF00007661061 1668128421333 2.3 GB
EGAF00007661062 1668127522465 2.3 GB
EGAF00007661063 1668127522465 785.5 MB
EGAF00007661064 1668127522465 782.2 MB
EGAF00007661065 1668127522465 2.1 GB
EGAF00007661066 1668128421332 2.2 GB
EGAF00007661067 1668127522465 786.6 MB
EGAF00007661068 1668126625151 804.5 MB
EGAF00007661069 1668126625151 1.7 GB
EGAF00007661070 1668127522465 1.8 GB
EGAF00007661071 1668127522465 2.4 GB
EGAF00007661072 1668126625151 2.5 GB
EGAF00007661073 1668127522465 907.5 MB
EGAF00007661074 1668126625151 928.8 MB
EGAF00007661075 1668126625151 753.9 MB
EGAF00007661076 1668126625151 761.2 MB
EGAF00007661077 1668126625151 445.4 MB
EGAF00007661078 1668126625151 440.2 MB
EGAF00007661079 1668126625151 36.3 MB
EGAF00007661080 1668126625151 33.1 MB
EGAF00007661081 1668126625151 486.5 MB
EGAF00007661082 1668126625151 472.5 MB
EGAF00007661083 1668126625151 738.0 MB
EGAF00007661084 1668126625151 756.4 MB
EGAF00007661085 1668126625151 412.6 MB
EGAF00007661086 1668126625151 422.3 MB
EGAF00007661087 1668126625151 497.7 MB
EGAF00007661088 1668127522465 510.0 MB
EGAF00007661089 1668126625151 469.4 MB
EGAF00007661090 1668127522465 465.8 MB
EGAF00007661091 1668126625151 656.5 MB
EGAF00007661092 1668127522465 661.2 MB
EGAF00007661093 1668127522465 716.4 MB
EGAF00007661094 1668126625151 750.5 MB
EGAF00007661095 1668126625151 533.3 MB
EGAF00007661096 1668126625151 556.9 MB
EGAF00007661097 1668126625151 554.6 MB
EGAF00007661098 1668127522465 566.1 MB
EGAF00007661099 1668127522465 831.6 MB
EGAF00007661100 1668126625151 833.2 MB
EGAF00007661101 1668126625151 452.6 MB
EGAF00007661102 1668126625151 462.8 MB
EGAF00007661103 1668126625151 304.6 MB
EGAF00007661104 1668126625151 310.6 MB
EGAF00007661105 1668127522465 643.4 MB
EGAF00007661106 1668126625152 702.6 MB
EGAF00007661107 1668126625152 633.6 MB
EGAF00007661108 1668127522465 646.0 MB
EGAF00007661109 1668127522465 819.1 MB
EGAF00007661110 1668126625151 853.1 MB
EGAF00007661111 1668126625151 547.7 MB
EGAF00007661112 1668126625151 566.9 MB
EGAF00007661113 1668126625151 848.2 MB
EGAF00007661114 1668126625151 879.6 MB
EGAF00007661115 1668126625151 425.5 MB
EGAF00007661116 1668126625151 436.5 MB
EGAF00007661117 1668127522465 832.5 MB
EGAF00007661118 1668126625151 858.5 MB
EGAF00007661119 1668126625151 398.4 MB
EGAF00007661120 1668126625151 413.6 MB
EGAF00007661121 1668126625151 519.4 MB
EGAF00007661122 1668126625151 529.7 MB
EGAF00007661123 1668126625151 907.0 MB
EGAF00007661124 1668127522465 910.3 MB
EGAF00007661125 1668126625152 343.5 MB
EGAF00007661126 1668126625152 321.7 MB
EGAF00007661127 1668126625152 855.9 MB
EGAF00007661128 1668126625152 883.1 MB
EGAF00007661129 1668126625151 930.0 MB
EGAF00007661130 1668126625151 963.6 MB
EGAF00007661131 1668140121026 439.0 MB
EGAF00007661132 1668126625151 417.2 MB
EGAF00007661133 1668126625151 883.0 MB
EGAF00007661134 1668126625152 863.9 MB
EGAF00007661135 1668126625151 760.6 MB
EGAF00007661136 1668126625151 781.4 MB
EGAF00007661137 1668126625151 889.9 MB
EGAF00007661138 1668127522465 915.0 MB
EGAF00007661139 1668126625151 809.2 MB
EGAF00007661140 1668126625151 835.9 MB
EGAF00007661141 1668126625151 633.7 MB
EGAF00007661142 1668126625151 635.0 MB
EGAF00007661143 1668127522465 829.8 MB
EGAF00007661144 1668126625151 850.7 MB
EGAF00007661145 1668126625151 681.8 MB
EGAF00007661146 1668126625151 686.8 MB
EGAF00007661147 1668126625151 1.0 GB
EGAF00007661148 1668127522465 1.0 GB
EGAF00007661149 1668126625151 550.8 MB
EGAF00007661150 1668127522465 572.0 MB
EGAF00007661151 1668125724574 605.7 MB
EGAF00007661152 1668125724574 598.5 MB
EGAF00007661153 1668125724574 605.4 MB
EGAF00007661154 1668126625151 627.6 MB
EGAF00007661155 1668126625151 674.3 MB
EGAF00007661156 1668126625151 678.7 MB
EGAF00007661157 1668125724574 83.9 MB
EGAF00007661158 1668125724574 68.3 MB
EGAF00007661159 1668126625151 931.7 MB
EGAF00007661160 1668126625151 869.6 MB
EGAF00007661161 1668126625151 723.6 MB
EGAF00007661162 1668125724574 725.4 MB
EGAF00007661163 1668127522465 1.4 GB
EGAF00007661164 1668127522465 1.5 GB
EGAF00007661165 1668126625151 692.7 MB
EGAF00007661166 1668127522465 695.4 MB
EGAF00007661167 1668126625151 1.1 GB
EGAF00007661168 1668126625151 1.0 GB
EGAF00007661169 1668125724574 558.6 MB
EGAF00007661170 1668125724574 568.8 MB
EGAF00007661171 1668126625151 606.9 MB
EGAF00007661172 1668125724574 625.8 MB
EGAF00007661173 1668126625151 464.3 MB
EGAF00007661174 1668126625151 476.2 MB
EGAF00007661175 1668125724574 151.7 MB
EGAF00007661176 1668125724574 141.4 MB
EGAF00007661177 1668126625151 654.7 MB
EGAF00007661178 1668126625151 671.4 MB
EGAF00007661179 1668126625151 1.0 GB
EGAF00007661180 1668126625151 951.4 MB
EGAF00007661181 1668125724574 327.8 MB
EGAF00007661182 1668125724574 336.3 MB
EGAF00007661183 1668126625151 229.6 MB
EGAF00007661184 1668125724574 229.8 MB
EGAF00007661185 1668140121026 727.0 MB
EGAF00007661186 1668126625151 741.1 MB
EGAF00007661187 1668125724574 271.8 MB
EGAF00007661188 1668125724574 283.9 MB
EGAF00007661189 1668125724574 582.6 MB
EGAF00007661190 1668126625151 559.9 MB
EGAF00007661191 1668127522465 555.9 MB
EGAF00007661192 1668125724574 567.6 MB
EGAF00007661193 1668126625151 607.8 MB
EGAF00007661194 1668126625151 620.7 MB
EGAF00007661195 1668125724574 560.1 MB
EGAF00007661196 1668126625151 574.8 MB
EGAF00007661197 1668126625151 740.8 MB
EGAF00007661198 1668126625151 753.3 MB
EGAF00007661199 1668126625151 1.0 GB
EGAF00007661200 1668125724574 1.0 GB
EGAF00007661201 1668126625151 998.1 MB
EGAF00007661202 1668126625151 1.0 GB
EGAF00007661203 1668126625151 795.4 MB
EGAF00007661204 1668126625151 814.1 MB
EGAF00007661205 1668126625151 432.1 MB
EGAF00007661206 1668126625151 450.0 MB
EGAF00007661207 1668126625152 742.2 MB
EGAF00007661208 1668125724574 756.0 MB
EGAF00007661209 1668127522465 633.6 MB
EGAF00007661210 1668125724574 653.1 MB
EGAF00007661211 1668125724574 631.9 MB
EGAF00007661212 1668125724574 647.4 MB
EGAF00007661213 1668125724574 602.5 MB
EGAF00007661214 1668126625151 612.6 MB
EGAF00007661215 1668128421332 880.8 MB
EGAF00007661216 1668125724574 885.6 MB
EGAF00007661217 1668127522465 595.0 MB
EGAF00007661218 1668125724574 600.9 MB
EGAF00007661219 1668128421332 820.7 MB
EGAF00007661220 1668128421332 845.6 MB
EGAF00007661221 1668125724574 633.3 MB
EGAF00007661222 1668127522465 627.3 MB
EGAF00007661223 1668128421332 866.9 MB
EGAF00007661224 1668140121026 898.8 MB
EGAF00007661225 1668125724574 495.6 MB
EGAF00007661226 1668127522465 499.8 MB
EGAF00007661227 1668127522465 662.8 MB
EGAF00007661228 1668127522465 691.3 MB
EGAF00007661229 1668127522465 602.9 MB
EGAF00007661230 1668126625151 616.5 MB
EGAF00007661231 1668127522465 438.3 MB
EGAF00007661232 1668127522465 455.6 MB
EGAF00007661233 1668125724574 69.4 MB
EGAF00007661234 1668126625151 71.0 MB
EGAF00007661235 1668127522465 725.6 MB
EGAF00007661236 1668127522465 739.4 MB
EGAF00007661237 1668125724574 565.9 MB
EGAF00007661238 1668127522465 579.0 MB
EGAF00007661239 1668125724574 686.3 MB
EGAF00007661240 1668125724574 715.6 MB
EGAF00007661241 1668126625151 579.9 MB
EGAF00007661242 1668125724574 590.6 MB
EGAF00007661243 1668127522465 638.5 MB
EGAF00007661244 1668126625151 650.4 MB
EGAF00007661245 1668125724574 730.3 MB
EGAF00007661246 1668125724574 765.1 MB
EGAF00007661247 1668126625151 605.9 MB
EGAF00007661248 1668125724574 617.4 MB
EGAF00007661249 1668126625151 1.0 GB
EGAF00007661250 1668125724574 1.0 GB
EGAF00007661251 1668126625151 723.3 MB
EGAF00007661252 1668125724574 751.7 MB
EGAF00007661253 1668127522465 732.3 MB
EGAF00007661254 1668126625151 751.2 MB
EGAF00007661255 1668126625151 696.1 MB
EGAF00007661256 1668126625151 708.9 MB
EGAF00007661257 1668126625151 792.0 MB
EGAF00007661258 1668125724574 806.3 MB
EGAF00007661259 1668125724574 745.4 MB
EGAF00007661260 1668125724574 765.3 MB
EGAF00007661261 1668126625151 549.1 MB
EGAF00007661262 1668125724574 562.7 MB
EGAF00007661263 1668125724574 767.0 MB
EGAF00007661264 1668125724574 790.2 MB
EGAF00007661265 1668125724574 861.0 MB
EGAF00007661266 1668126625151 894.9 MB
EGAF00007661267 1668126625151 433.7 MB
EGAF00007661268 1668125724574 450.4 MB
EGAF00007661269 1668126625151 562.8 MB
EGAF00007661270 1668126625151 582.9 MB
EGAF00007661271 1668126625151 608.3 MB
EGAF00007661272 1668126625151 629.3 MB
EGAF00007661273 1668126625151 907.1 MB
EGAF00007661274 1668127522465 934.1 MB
EGAF00007661275 1668126625151 866.9 MB
EGAF00007661276 1668126625151 900.3 MB
EGAF00007661277 1668126625151 607.6 MB
EGAF00007661278 1668126625151 623.5 MB
EGAF00007661279 1668140121026 653.0 MB
EGAF00007661280 1668126625151 671.3 MB
EGAF00007661281 1668125724574 373.7 MB
EGAF00007661282 1668125724574 385.5 MB
EGAF00007661283 1668125724574 168.5 MB
EGAF00007661284 1668125724574 173.0 MB
EGAF00007661285 1668126625151 460.8 MB
EGAF00007661286 1668126625151 477.2 MB
EGAF00007661287 1668126625151 819.2 MB
EGAF00007661288 1668126625151 833.3 MB
EGAF00007661289 1668125724574 204.5 MB
EGAF00007661290 1668126625151 211.5 MB
EGAF00007661291 1668126625151 509.7 MB
EGAF00007661292 1668126625151 517.1 MB
EGAF00007661293 1668126625151 673.5 MB
EGAF00007661294 1668126625151 687.8 MB
EGAF00007661295 1668126625151 784.4 MB
EGAF00007661296 1668126625151 817.5 MB
EGAF00007661297 1668126625151 738.8 MB
EGAF00007661298 1668126625151 735.7 MB
EGAF00007661299 1668126625151 755.6 MB
EGAF00007661300 1668126625151 719.2 MB
EGAF00007661301 1668126625151 155.9 MB
EGAF00007661302 1668126625151 158.5 MB
EGAF00007661303 1668126625151 531.2 MB
EGAF00007661304 1668126625151 547.3 MB
EGAF00007661305 1668125724574 777.2 MB
EGAF00007661306 1668125724574 805.8 MB
EGAF00007661307 1668125724574 1.1 GB
EGAF00007661308 1668126625151 1.1 GB
EGAF00007661309 1668125724574 542.1 MB
EGAF00007661310 1668125724574 553.3 MB
EGAF00007661311 1668126625151 1.2 GB
EGAF00007661312 1668125724574 1.2 GB
EGAF00007661313 1668127522465 523.3 MB
EGAF00007661314 1668127522465 528.3 MB
EGAF00007661315 1668125724574 838.1 MB
EGAF00007661316 1668126625151 842.5 MB
EGAF00007661317 1668125724574 1.6 GB
EGAF00007661318 1668125724574 1.6 GB
EGAF00007661319 1668125724574 748.4 MB
EGAF00007661320 1668125724574 742.8 MB
EGAF00007661321 1668126625151 694.1 MB
EGAF00007661322 1668125724574 720.9 MB
EGAF00007661323 1668125724574 770.4 MB
EGAF00007661324 1668126625151 787.9 MB
EGAF00007661325 1668125724574 808.5 MB
EGAF00007661326 1668126625151 808.8 MB
EGAF00007661327 1668125724574 1.1 MB
EGAF00007661328 1668125724574 1.1 MB
EGAF00007661329 1668125724574 784.9 MB
EGAF00007661330 1668127522465 810.9 MB
EGAF00007661331 1668126625151 588.4 MB
EGAF00007661332 1668126625151 600.7 MB
EGAF00007661333 1668128421332 1.5 GB
EGAF00007661334 1668128421332 1.6 GB
EGAF00007661335 1668125724574 507.1 MB
EGAF00007661336 1668125724574 518.9 MB
EGAF00007661337 1668126625151 627.2 MB
EGAF00007661338 1668126625151 642.5 MB
EGAF00007661339 1668125724574 816.8 MB
EGAF00007661340 1668125724574 825.4 MB
EGAF00007661341 1668125724574 804.5 MB
EGAF00007661342 1668127522465 837.3 MB
EGAF00007661343 1668126625151 534.1 MB
EGAF00007661344 1668125724574 542.4 MB
EGAF00007661345 1668125724574 754.8 MB
EGAF00007661346 1668127522465 779.2 MB
EGAF00007661347 1668125724574 837.5 MB
EGAF00007661348 1668126625151 869.3 MB
EGAF00007661349 1668126625151 460.9 MB
EGAF00007661350 1668126625151 474.7 MB
EGAF00007661351 1668126625151 781.0 MB
EGAF00007661352 1668125724574 761.3 MB
EGAF00007661353 1668125724574 874.6 MB
EGAF00007661354 1668127522465 899.7 MB
EGAF00007661355 1668126625151 564.7 MB
EGAF00007661356 1668125724574 589.0 MB
EGAF00007661357 1668127522465 560.5 MB
EGAF00007661358 1668127522465 584.5 MB
EGAF00007661359 1668125724574 387.0 MB
EGAF00007661360 1668125724574 394.6 MB
EGAF00007661361 1668126625151 495.7 MB
EGAF00007661362 1668125724574 506.7 MB
EGAF00007661363 1668125724574 323.8 MB
EGAF00007661364 1668125724574 329.2 MB
EGAF00007661365 1668125724574 691.1 MB
EGAF00007661366 1668126625151 716.9 MB
EGAF00007661367 1668125724574 1.0 GB
EGAF00007661368 1668125724574 1.1 GB
EGAF00007661369 1668127522465 850.0 MB
EGAF00007661370 1668125724574 871.6 MB
EGAF00007661371 1668125724574 571.1 MB
EGAF00007661372 1668125724574 576.8 MB
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548 Files (457.3 GB)