Need Help?

Single-cell bam files and RNA sequencing of viral RNA stocks

244 infected single-cell alveolar bam files, 48 empty well bam files, and 52 RNA sequencing of amplicons (4 SARS-CoV-2 variants with 12 batches and 4 viral variants pool samples). 244 alveolar single cells were captured over 12 experimental batches and experimental condition is written in metadata uploaded as "infected_cells_final_revision.csv". on github (https://github.com/twkim-0510/SARS-CoV-2_viral_competition). Each bam file name corresponds to the sample_name column of the metadata.

Request Access

These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) provided by Graduate School of Medical Science and Engineering in Korea Advanced Institute of Science and Technology (KAIST-GSMSE) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions.

These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) provided by Graduate School of Medical Science and Engineering in Korea Advanced Institute of Science and Technology (KAIST-GSMSE) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom KAIST-GSMSE grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access dataset(s) to which the User Institution has requested access. Data Producers: KAIST-GSMSE and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify KAIST-GSMSE within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify KAIST-GSMSE prior to any significant changes to the protocol for the Project. 14. The User Institution will notify KAIST-GSMSE promptly when it becomes aware of a breach of the terms or conditions of this agreement. 15. Either party may terminate this agreement by written notice to the other party. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than KAIST-GSMSE. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 18. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Republic of Korea (South Korea) and shall be subject to the exclusive jurisdiction of the South Korean courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006730 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007636558 bam 16.9 MB
EGAF00007636559 bam 15.4 MB
EGAF00007636560 bam 13.0 MB
EGAF00007636561 bam 39.0 MB
EGAF00007636562 bam 8.8 MB
EGAF00007636563 bam 24.2 MB
EGAF00007636564 bam 15.6 MB
EGAF00007636565 bam 14.5 MB
EGAF00007636566 bam 8.1 MB
EGAF00007636567 bam 13.4 MB
EGAF00007636568 bam 12.0 MB
EGAF00007636569 bam 23.7 MB
EGAF00007636570 bam 63.6 MB
EGAF00007636571 bam 44.5 MB
EGAF00007636572 bam 26.8 MB
EGAF00007636573 bam 49.2 MB
EGAF00007636574 bam 48.5 MB
EGAF00007636575 bam 56.7 MB
EGAF00007636576 bam 50.0 MB
EGAF00007636577 bam 43.3 MB
EGAF00007636578 bam 45.3 MB
EGAF00007636579 bam 60.3 MB
EGAF00007636580 bam 42.0 MB
EGAF00007636581 bam 50.0 MB
EGAF00007636582 bam 45.4 MB
EGAF00007636583 bam 50.7 MB
EGAF00007636584 bam 49.8 MB
EGAF00007636585 bam 63.9 MB
EGAF00007636586 bam 39.2 MB
EGAF00007636587 bam 45.8 MB
EGAF00007636588 bam 42.3 MB
EGAF00007636589 bam 46.8 MB
EGAF00007636590 bam 87.9 MB
EGAF00007636591 bam 98.7 MB
EGAF00007636592 bam 93.1 MB
EGAF00007636593 bam 83.7 MB
EGAF00007636594 bam 114.2 MB
EGAF00007636595 bam 74.0 MB
EGAF00007636596 bam 84.6 MB
EGAF00007636597 bam 79.6 MB
EGAF00007636598 bam 79.1 MB
EGAF00007636599 bam 76.9 MB
EGAF00007636600 bam 81.3 MB
EGAF00007636601 bam 98.1 MB
EGAF00007636602 bam 117.6 MB
EGAF00007636603 bam 69.7 MB
EGAF00007636604 bam 88.6 MB
EGAF00007636605 bam 82.8 MB
EGAF00007636606 bam 82.3 MB
EGAF00007636607 bam 90.6 MB
EGAF00007636608 bam 84.1 MB
EGAF00007636609 bam 97.2 MB
EGAF00007636610 bam 748.9 kB
EGAF00007636611 bam 359.5 kB
EGAF00007636612 bam 2.5 MB
EGAF00007636613 bam 4.9 MB
EGAF00007636614 bam 484.6 kB
EGAF00007636615 bam 3.3 MB
EGAF00007636616 bam 17.7 MB
EGAF00007636617 bam 14.4 MB
EGAF00007636618 bam 8.8 MB
EGAF00007636619 bam 225.3 kB
EGAF00007636620 bam 516.3 kB
EGAF00007636621 bam 1.1 MB
EGAF00007636622 bam 13.6 MB
EGAF00007636623 bam 15.0 MB
EGAF00007636624 bam 609.5 kB
EGAF00007636625 bam 558.1 kB
EGAF00007636626 bam 18.4 MB
EGAF00007636627 bam 20.3 MB
EGAF00007636628 bam 18.4 MB
EGAF00007636629 bam 27.1 MB
EGAF00007636630 bam 2.4 MB
EGAF00007636631 bam 11.8 MB
EGAF00007636632 bam 862.1 kB
EGAF00007636633 bam 55.0 MB
EGAF00007636634 bam 48.0 MB
EGAF00007636635 bam 21.3 MB
EGAF00007636636 bam 724.9 kB
EGAF00007636637 bam 39.0 MB
EGAF00007636638 bam 31.4 MB
EGAF00007636639 bam 40.0 MB
EGAF00007636640 bam 219.4 kB
EGAF00007636641 bam 161.0 kB
EGAF00007636642 bam 2.3 MB
EGAF00007636643 bam 3.4 MB
EGAF00007636644 bam 3.2 MB
EGAF00007636645 bam 2.5 MB
EGAF00007636646 bam 3.0 MB
EGAF00007636647 bam 3.0 MB
EGAF00007636648 bam 3.2 MB
EGAF00007636649 bam 2.6 MB
EGAF00007636650 bam 74.7 MB
EGAF00007636651 bam 131.8 MB
EGAF00007636652 bam 107.3 MB
EGAF00007636653 bam 93.1 MB
EGAF00007636654 bam 89.9 MB
EGAF00007636655 bam 88.0 MB
EGAF00007636656 bam 113.1 MB
EGAF00007636657 bam 128.3 MB
EGAF00007636658 bam 115.0 MB
EGAF00007636659 bam 86.2 MB
EGAF00007636660 bam 6.7 MB
EGAF00007636661 bam 141.3 MB
EGAF00007636662 bam 70.2 MB
EGAF00007636663 bam 98.3 MB
EGAF00007636664 bam 161.8 MB
EGAF00007636665 bam 62.5 MB
EGAF00007636666 bam 106.2 MB
EGAF00007636667 bam 82.4 MB
EGAF00007636668 bam 199.1 MB
EGAF00007636669 bam 124.9 MB
EGAF00007636670 bam 141.6 MB
EGAF00007636671 bam 240.5 MB
EGAF00007636672 bam 127.1 MB
EGAF00007636673 bam 213.4 MB
EGAF00007636674 bam 230.8 MB
EGAF00007636675 bam 205.8 MB
EGAF00007636676 bam 71.9 MB
EGAF00007636677 bam 175.3 MB
EGAF00007636678 bam 48.4 MB
EGAF00007636679 bam 32.6 MB
EGAF00007636680 bam 107.3 MB
EGAF00007636681 bam 91.3 MB
EGAF00007636682 bam 75.9 MB
EGAF00007636683 bam 82.4 MB
EGAF00007636684 bam 71.9 MB
EGAF00007636685 bam 81.0 MB
EGAF00007636686 bam 46.5 MB
EGAF00007636687 bam 55.3 MB
EGAF00007636688 bam 103.4 MB
EGAF00007636689 bam 88.8 MB
EGAF00007636690 bam 29.0 MB
EGAF00007636691 bam 93.1 MB
EGAF00007636692 bam 178.7 MB
EGAF00007636693 bam 65.1 MB
EGAF00007636694 bam 87.0 MB
EGAF00007636695 bam 87.8 MB
EGAF00007636696 bam 207.3 MB
EGAF00007636697 bam 76.3 MB
EGAF00007636698 bam 124.8 MB
EGAF00007636699 bam 173.7 MB
EGAF00007636700 bam 137.0 MB
EGAF00007636701 bam 157.5 MB
EGAF00007636702 bam 196.1 MB
EGAF00007636703 bam 280.1 MB
EGAF00007636704 bam 169.1 MB
EGAF00007636705 bam 200.1 MB
EGAF00007636706 bam 202.8 MB
EGAF00007636707 bam 83.9 MB
EGAF00007636708 bam 152.1 MB
EGAF00007636709 bam 126.6 MB
EGAF00007636710 bam 201.9 MB
EGAF00007636711 bam 139.0 MB
EGAF00007636712 bam 85.0 MB
EGAF00007636713 bam 107.6 MB
EGAF00007636714 bam 62.9 MB
EGAF00007636715 bam 1.3 MB
EGAF00007636716 bam 1.2 MB
EGAF00007636717 bam 2.0 MB
EGAF00007636718 bam 60.6 MB
EGAF00007636719 bam 81.0 MB
EGAF00007636720 bam 79.8 MB
EGAF00007636721 bam 203.9 MB
EGAF00007636722 bam 174.7 MB
EGAF00007636723 bam 199.8 MB
EGAF00007636724 bam 91.6 MB
EGAF00007636725 bam 3.0 MB
EGAF00007636726 bam 45.7 MB
EGAF00007636727 bam 172.1 MB
EGAF00007636728 bam 52.0 MB
EGAF00007636729 bam 157.9 MB
EGAF00007636730 bam 156.5 MB
EGAF00007636731 bam 168.0 MB
EGAF00007636732 bam 101.0 MB
EGAF00007636733 bam 179.3 MB
EGAF00007636734 bam 46.5 MB
EGAF00007636735 bam 40.3 MB
EGAF00007636736 bam 123.3 MB
EGAF00007636737 bam 57.8 MB
EGAF00007636738 bam 172.3 MB
EGAF00007636739 bam 126.6 MB
EGAF00007636740 bam 107.2 MB
EGAF00007636741 bam 47.3 MB
EGAF00007636742 bam 55.3 MB
EGAF00007636743 bam 145.1 MB
EGAF00007636744 bam 27.5 MB
EGAF00007636745 bam 94.8 MB
EGAF00007636746 bam 69.4 MB
EGAF00007636747 bam 44.7 MB
EGAF00007636748 bam 103.4 MB
EGAF00007636749 bam 88.8 MB
EGAF00007636750 bam 115.1 MB
EGAF00007636751 bam 45.3 MB
EGAF00007636752 bam 32.3 MB
EGAF00007636753 bam 43.9 MB
EGAF00007636754 bam 57.4 MB
EGAF00007636755 bam 51.0 MB
EGAF00007636756 bam 45.9 MB
EGAF00007636757 bam 88.0 MB
EGAF00007636758 bam 36.2 MB
EGAF00007636759 bam 44.2 MB
EGAF00007636760 bam 38.0 MB
EGAF00007636761 bam 87.7 MB
EGAF00007636762 bam 42.4 MB
EGAF00007636763 bam 95.7 MB
EGAF00007636764 bam 64.1 MB
EGAF00007636765 bam 60.1 MB
EGAF00007636766 bam 52.2 MB
EGAF00007636767 bam 43.1 MB
EGAF00007636768 bam 75.0 MB
EGAF00007636769 bam 46.5 MB
EGAF00007636770 bam 75.6 MB
EGAF00007636771 bam 2.3 MB
EGAF00007636772 bam 51.5 MB
EGAF00007636773 bam 60.9 MB
EGAF00007636774 bam 83.0 MB
EGAF00007636775 bam 95.7 MB
EGAF00007636776 bam 55.5 MB
EGAF00007636777 bam 98.3 MB
EGAF00007636778 bam 90.1 MB
EGAF00007636779 bam 74.9 MB
EGAF00007636780 bam 48.2 MB
EGAF00007636781 bam 68.1 MB
EGAF00007636782 bam 57.2 MB
EGAF00007636783 bam 133.4 MB
EGAF00007636784 bam 46.7 MB
EGAF00007636785 bam 58.8 MB
EGAF00007636786 bam 45.4 MB
EGAF00007636787 bam 103.5 MB
EGAF00007636788 bam 77.0 MB
EGAF00007636789 bam 52.2 MB
EGAF00007636790 bam 44.7 MB
EGAF00007636791 bam 72.5 MB
EGAF00007636792 bam 32.4 MB
EGAF00007636793 bam 24.5 MB
EGAF00007636794 bam 49.8 MB
EGAF00007636795 bam 36.0 MB
EGAF00007636796 bam 25.6 MB
EGAF00007636797 bam 42.5 MB
EGAF00007636798 bam 30.9 MB
EGAF00007636799 bam 77.4 MB
EGAF00007636800 bam 29.0 MB
EGAF00007636801 bam 117.0 MB
EGAF00007636802 bam 62.4 MB
EGAF00007636803 bam 42.4 MB
EGAF00007636804 bam 38.3 MB
EGAF00007636805 bam 89.3 MB
EGAF00007636806 bam 5.8 MB
EGAF00007636807 bam 33.3 MB
EGAF00007636808 bam 57.1 MB
EGAF00007636809 bam 75.7 MB
EGAF00007636810 bam 75.2 MB
EGAF00007636811 bam 55.7 MB
EGAF00007636812 bam 53.7 MB
EGAF00007636813 bam 24.7 MB
EGAF00007636814 bam 85.1 MB
EGAF00007636815 bam 49.3 MB
EGAF00007636816 bam 36.8 MB
EGAF00007636817 bam 63.7 MB
EGAF00007636818 bam 29.7 MB
EGAF00007636819 bam 16.8 MB
EGAF00007636820 bam 78.1 MB
EGAF00007636821 bam 127.3 MB
EGAF00007636822 bam 66.8 MB
EGAF00007636823 bam 91.0 MB
EGAF00007636824 bam 87.4 MB
EGAF00007636825 bam 99.2 MB
EGAF00007636826 bam 66.0 MB
EGAF00007636827 bam 92.6 MB
EGAF00007636828 bam 74.5 MB
EGAF00007636829 bam 62.8 MB
EGAF00007636830 bam 51.5 MB
EGAF00007636831 bam 96.3 MB
EGAF00007636832 bam 101.9 MB
EGAF00007636833 bam 87.5 MB
EGAF00007636834 bam 121.6 MB
EGAF00007636835 bam 49.9 MB
EGAF00007636836 bam 248.4 MB
EGAF00007636837 bam 779.7 MB
EGAF00007636838 bam 217.2 MB
EGAF00007636839 bam 125.8 MB
EGAF00007636840 bam 92.6 MB
EGAF00007636841 bam 82.7 MB
EGAF00007636842 bam 431.7 MB
EGAF00007636843 bam 245.5 MB
EGAF00007636844 bam 230.9 MB
EGAF00007636845 bam 186.2 MB
EGAF00007636846 bam 17.2 MB
EGAF00007636847 bam 198.0 MB
EGAF00007636848 bam 490.6 MB
EGAF00007636849 bam 1.0 GB
EGAF00007636850 bam 297.1 MB
EGAF00007636851 bam 184.0 MB
EGAF00007636852 bam 3.2 MB
EGAF00007636853 bam 35.2 MB
EGAF00007636854 bam 8.7 MB
EGAF00007636855 bam 97.5 MB
EGAF00007636856 bam 238.7 MB
EGAF00007636857 bam 141.1 MB
EGAF00007636858 bam 550.5 MB
EGAF00007636859 bam 257.8 MB
EGAF00007636860 bam 17.0 MB
EGAF00007636861 bam 212.9 MB
EGAF00007636862 bam 324.3 MB
EGAF00007636863 bam 42.0 MB
EGAF00007636864 bam 692.3 MB
EGAF00007636865 bam 99.0 MB
EGAF00007636866 bam 32.0 MB
EGAF00007636867 bam 157.1 MB
EGAF00007636868 bam 179.4 MB
EGAF00007636869 bam 243.0 MB
EGAF00007636870 bam 300.5 MB
EGAF00007636871 bam 8.1 MB
EGAF00007636872 bam 305.6 MB
EGAF00007636873 bam 414.3 MB
EGAF00007636874 bam 595.7 MB
EGAF00007636875 bam 4.7 MB
EGAF00007636876 bam 20.5 MB
EGAF00007636877 bam 4.1 MB
EGAF00007636878 bam 364.6 MB
EGAF00007636879 bam 221.3 MB
EGAF00007636880 bam 49.7 MB
EGAF00007636881 bam 8.9 MB
EGAF00007636882 bam 350.1 MB
EGAF00007636883 bam 182.3 MB
EGAF00007636884 bam 537.6 MB
EGAF00007636885 bam 259.8 MB
EGAF00007636886 bam 765.5 MB
EGAF00007636887 bam 93.7 MB
EGAF00007636888 bam 238.9 MB
EGAF00007636889 bam 44.6 MB
EGAF00007636890 bam 64.5 MB
EGAF00007636891 bam 36.9 MB
EGAF00007636892 bam 50.8 MB
EGAF00007636893 bam 32.8 MB
EGAF00007636894 bam 53.4 kB
EGAF00007636895 bam 3.0 MB
EGAF00007636896 bam 2.5 MB
EGAF00007636897 bam 1.6 MB
EGAF00007636898 bam 2.2 MB
EGAF00007636899 bam 7.8 MB
EGAF00007636900 bam 2.5 MB
EGAF00007636901 bam 1.6 MB
344 Files (33.0 GB)