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Reference alignment files (BAM) and gene count files of 10 tumor samples from nanopore sequencing

Reads were aligned to 1000 Genomes assembly reference (hs37d5) using minimap2 2.22. SAM-to-BAM conversion, BAM sorting and indexing were performed with SAMtools 1.13. Read summarization was performed with featureCounts (from Subread 2.0.3) over exon features based on GENCODE Version 19 gene models. Strand specific counting was used.

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Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007539119 1667410221900 3.3 GB
EGAF00007539120 1667399423649 3.1 MB
EGAF00007539121 1667401221593 2.4 GB
EGAF00007539122 1667400322763 3.1 MB
EGAF00007539123 1667400322763 221.5 MB
EGAF00007539124 1667400322763 3.1 MB
EGAF00007539125 1667399423649 487.0 MB
EGAF00007539126 1667398523363 3.1 MB
EGAF00007539127 1667399423649 184.7 MB
EGAF00007539128 1667400322763 3.1 MB
EGAF00007539129 1667402122440 634.5 MB
EGAF00007539130 1667398523363 3.1 MB
EGAF00007539131 1667401221593 534.5 MB
EGAF00007539132 1667399423649 3.1 MB
EGAF00007539133 1667402122439 496.1 MB
EGAF00007539134 1667399423649 3.1 MB
EGAF00007539135 1667394021761 513.9 MB
EGAF00007539136 1667392222630 3.1 MB
EGAF00007539137 1667393122293 576.5 MB
EGAF00007539138 1667392222630 3.1 MB
EGAF00007539213 1667407521381 1.9 MB
EGAF00007539214 1667403922331 1.7 MB
EGAF00007539215 1667403922331 1.9 MB
EGAF00007539216 1667403922331 1.9 MB
EGAF00007539217 1667403922331 2.4 MB
EGAF00007539218 1667403922331 1.9 MB
EGAF00007539219 1667403922331 1.8 MB
EGAF00007539220 1667403922331 1.9 MB
EGAF00007539221 1667403922331 1.9 MB
EGAF00007539222 1667403022210 2.7 MB
30 Files (9.4 GB)