Reference alignment files (BAM) and gene count files of 10 tumor samples from nanopore sequencing
Reads were aligned to 1000 Genomes assembly reference (hs37d5) using minimap2 2.22. SAM-to-BAM conversion, BAM sorting and indexing were performed with SAMtools 1.13. Read summarization was performed with featureCounts (from Subread 2.0.3) over exon features based on GENCODE Version 19 gene models. Strand specific counting was used.
- 10 samples
- DAC: EGAC00001000452
Data Transfer Agreement for the German Cancer Research Center
To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form to collect information about the request, which has to be filled and signed. Your request will be evaluated by the responsible Data Access Committee (DAC). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006317 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00007539119 | bam | 3.3 GB | ||
| EGAF00007539120 | tsv | 3.1 MB | ||
| EGAF00007539121 | bam | 2.4 GB | ||
| EGAF00007539122 | tsv | 3.1 MB | ||
| EGAF00007539123 | bam | 221.5 MB | ||
| EGAF00007539124 | tsv | 3.1 MB | ||
| EGAF00007539125 | bam | 487.0 MB | ||
| EGAF00007539126 | tsv | 3.1 MB | ||
| EGAF00007539127 | bam | 184.7 MB | ||
| EGAF00007539128 | tsv | 3.1 MB | ||
| EGAF00007539129 | bam | 634.5 MB | ||
| EGAF00007539130 | tsv | 3.1 MB | ||
| EGAF00007539131 | bam | 534.5 MB | ||
| EGAF00007539132 | tsv | 3.1 MB | ||
| EGAF00007539133 | bam | 496.1 MB | ||
| EGAF00007539134 | tsv | 3.1 MB | ||
| EGAF00007539135 | bam | 513.9 MB | ||
| EGAF00007539136 | tsv | 3.1 MB | ||
| EGAF00007539137 | bam | 576.5 MB | ||
| EGAF00007539138 | tsv | 3.1 MB | ||
| EGAF00007539213 | bai | 1.9 MB | ||
| EGAF00007539214 | bai | 1.7 MB | ||
| EGAF00007539215 | bai | 1.9 MB | ||
| EGAF00007539216 | bai | 1.9 MB | ||
| EGAF00007539217 | bai | 2.4 MB | ||
| EGAF00007539218 | bai | 1.9 MB | ||
| EGAF00007539219 | bai | 1.8 MB | ||
| EGAF00007539220 | bai | 1.9 MB | ||
| EGAF00007539221 | bai | 1.9 MB | ||
| EGAF00007539222 | bai | 2.7 MB | ||
| 30 Files (9.4 GB) | ||||