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Reference alignment files (BAM) and gene count files of 10 tumor samples from nanopore sequencing

Reads were aligned to 1000 Genomes assembly reference (hs37d5) using minimap2 2.22. SAM-to-BAM conversion, BAM sorting and indexing were performed with SAMtools 1.13. Read summarization was performed with featureCounts (from Subread 2.0.3) over exon features based on GENCODE Version 19 gene models. Strand specific counting was used.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006317 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007539119 bam 3.3 GB
EGAF00007539120 tsv 3.1 MB
EGAF00007539121 bam 2.4 GB
EGAF00007539122 tsv 3.1 MB
EGAF00007539123 bam 221.5 MB
EGAF00007539124 tsv 3.1 MB
EGAF00007539125 bam 487.0 MB
EGAF00007539126 tsv 3.1 MB
EGAF00007539127 bam 184.7 MB
EGAF00007539128 tsv 3.1 MB
EGAF00007539129 bam 634.5 MB
EGAF00007539130 tsv 3.1 MB
EGAF00007539131 bam 534.5 MB
EGAF00007539132 tsv 3.1 MB
EGAF00007539133 bam 496.1 MB
EGAF00007539134 tsv 3.1 MB
EGAF00007539135 bam 513.9 MB
EGAF00007539136 tsv 3.1 MB
EGAF00007539137 bam 576.5 MB
EGAF00007539138 tsv 3.1 MB
EGAF00007539213 bai 1.9 MB
EGAF00007539214 bai 1.7 MB
EGAF00007539215 bai 1.9 MB
EGAF00007539216 bai 1.9 MB
EGAF00007539217 bai 2.4 MB
EGAF00007539218 bai 1.9 MB
EGAF00007539219 bai 1.8 MB
EGAF00007539220 bai 1.9 MB
EGAF00007539221 bai 1.9 MB
EGAF00007539222 bai 2.7 MB
30 Files (9.4 GB)